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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1720130 |
| Transcript ID | Lj1g3v1720130.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: LOW QUALITY PROTEIN: DNA excision repair protein ERCC-8-like [Glycine max] gi|356514489|ref|XP_003525938.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 27 | 232 | 206 | 5.60E-107 | – | |
| PANTHER | 27 | 232 | 206 | 5.60E-107 | – | |
| SMART | 32 | 72 | 41 | 0.43 | ||
| Gene3D | 36 | 236 | 201 | 3.60E-46 | ||
| SUPERFAMILY | 39 | 230 | 192 | 2.93E-45 | ||
| ProSiteProfiles | 39 | 81 | 43 | 9.172 | ||
| ProSiteProfiles | 39 | 228 | 190 | 23.045 | ||
| SMART | 87 | 132 | 46 | 6.30E-04 | ||
| ProSiteProfiles | 99 | 141 | 43 | 10.375 | ||
| Pfam | 114 | 132 | 19 | 0.065 | ||
| PRINTS | 119 | 133 | 15 | 1.00E-06 | ||
| SMART | 179 | 219 | 41 | 2.10E-08 | ||
| Pfam | 182 | 219 | 38 | 2.30E-07 | ||
| ProSiteProfiles | 186 | 228 | 43 | 13.917 | ||
| PRINTS | 206 | 220 | 15 | 1.00E-06 | ||
| ProSitePatterns | 206 | 220 | 15 | – | ||
| MobiDBLite | 247 | 288 | 42 | – | – | |
| PANTHER | 287 | 399 | 113 | 5.60E-107 | – | |
| PANTHER | 287 | 399 | 113 | 5.60E-107 | – | |
| SMART | 288 | 330 | 43 | 4.00E-04 | ||
| ProSiteProfiles | 298 | 339 | 42 | 14.084 | ||
| ProSiteProfiles | 298 | 339 | 42 | 12.974 | ||
| Pfam | 299 | 330 | 32 | 0.0013 | ||
| Gene3D | 299 | 397 | 99 | 3.60E-46 | ||
| SUPERFAMILY | 300 | 398 | 99 | 2.93E-45 | ||
| ProSitePatterns | 317 | 331 | 15 | – | ||
| PRINTS | 317 | 331 | 15 | 1.00E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v1720130.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1720130.1, powered by CORGI.
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