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Lj1g3v1785980.1

Overview

Field Value
Gene ID Lj1g3v1785980
Transcript ID Lj1g3v1785980.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 81 81 – –
PANTHER
PTHR11040
12 175 164 9.90E-103 –
PANTHER
PTHR11040:SF44
12 175 164 9.90E-103 –
TIGRFAM
TIGR00820
17 175 159 3.60E-80
IPR004698
Pfam
PF02535
21 172 152 6.30E-47
IPR003689
TMHMM
TMhelix
21 43 23 – –
TMHMM
TMhelix
53 72 20 – –
Phobius
TRANSMEMBRANE
82 104 23 – –
TMHMM
TMhelix
84 106 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
105 123 19 – –
TMHMM
TMhelix
121 143 23 – –
Phobius
TRANSMEMBRANE
124 143 20 – –
Phobius
CYTOPLASMIC_DOMAIN
144 154 11 – –
Phobius
TRANSMEMBRANE
155 174 20 – –
TMHMM
TMhelix
155 174 20 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
175 175 1 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005385
Molecular function Zinc ion transmembrane transporter activity Enables the transfer of zinc (Zn) ions from one side of a membrane to the other.
Subterm of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0030001
Biological process Metal ion transport The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of
GO:0046873
Molecular function Metal ion transmembrane transporter activity Enables the transfer of metal ions from one side of a membrane to the other.
Subterm of
GO:0055085
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
Subterm of
GO:0071577
Biological process Zinc ion transmembrane transport A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj1g3v1785980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1785980.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.