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Lj1g3v1787640.1

Overview

Field Value
Gene ID Lj1g3v1787640
Transcript ID Lj1g3v1787640.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description NOL1/NOP2/Sun domain family member 5B [Medicago truncatula] gi|357465793|ref|XP_003603181.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22807
16 399 384 1.20E-163 –
PANTHER
PTHR22807:SF4
16 399 384 1.20E-163 –
ProSiteProfiles
PS51686
92 377 286 51.564
IPR001678
SUPERFAMILY
SSF53335
100 376 277 6.78E-48
IPR029063
PRINTS
PR02008
149 163 15 3.50E-14
IPR023267
Gene3D
G3DSA:3.40.50.150
160 377 218 3.60E-52
IPR029063
Pfam
PF01189
168 374 207 3.40E-28
IPR001678
CDD
cd02440
177 258 82 1.38E-05 –
PRINTS
PR02008
178 188 11 3.50E-14
IPR023267
PRINTS
PR02008
247 259 13 3.50E-14
IPR023267
PRINTS
PR02008
303 319 17 3.50E-14
IPR023267
PRINTS
PR02008
359 376 18 3.50E-14
IPR023267

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj1g3v1787640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1787640.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.