Domain Predictions — View

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PR02008

Source: PRINTS

Description

RNA (C5-cytosine) methyltransferase signature

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 24

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v1787640.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	NOL1/NOP2/Sun domain family member 5B [Medicago truncatula] gi\|357465793\|ref\|XP_003603181.1\|	Domains G3DSA:3.40.50.150 IPR001678 IPR023267 IPR029063 PF01189 PR02008 PS51686 PTHR22807 PTHR22807:SF4 SSF53335 cd02440	11
Lj1g3v1787640.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	NOL1/NOP2/Sun domain family member 5B [Medicago truncatula] gi\|357465793\|ref\|XP_003603181.1\|	Domains G3DSA:3.40.50.150 IPR001678 IPR023267 IPR029063 PF01189 PR02008 PS51686 PTHR22807 PTHR22807:SF4 SSF53335 cd02440 mobidb-lite	12
Lj2g3v3085360.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribosomal RNA small subunit methyltransferase B [Medicago truncatula] gi\|357494215\|ref\|XP_003617396.1\|	Domains G3DSA:3.40.50.150 IPR001678 IPR018314 IPR023267 IPR029063 PF01189 PR02008 PS01153 PS51686 PTHR22807 PTHR22807:SF34 SSF53335 mobidb-lite	13
Lj2g3v3085360.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribosomal RNA small subunit methyltransferase B [Medicago truncatula] gi\|357494215\|ref\|XP_003617396.1\|	Domains G3DSA:2.30.130.10 G3DSA:3.40.50.150 IPR001678 IPR002478 IPR015947 IPR018314 IPR023267 IPR029063 PF01189 PF01472 PR02008 PS01153 PS50890 PS51686 PTHR22807 PTHR22807:SF34 SM00359 SSF53335 SSF88697 mobidb-lite	20
Lj2g3v3303470.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ribosomal RNA small subunit methyltransferase B-like [Cicer arietinum] gi\|502099597\|ref\|XP_004491518.1\|	Domains G3DSA:1.10.940.10 G3DSA:3.40.50.150 IPR001678 IPR004573 IPR006027 IPR023267 IPR023268 IPR029063 PF01029 PF01189 PR02008 PR02009 PS51686 PTHR22807 PTHR22807:SF30 SSF48013 SSF53335 TIGR00563 cd02440 mobidb-lite	20
Lj2g3v3303470.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ribosomal RNA small subunit methyltransferase B-like [Cicer arietinum] gi\|502099597\|ref\|XP_004491518.1\|	Domains G3DSA:3.40.50.150 IPR001678 IPR023267 IPR029063 PF01189 PR02008 PS51686 PTHR22807 PTHR22807:SF30 SSF53335 cd02440	11
Lj4g3v1061080.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b-like [Cicer arietinum] gi\|502153519\|ref\|XP_004509368.1\|	Domains G3DSA:3.40.50.150 IPR001678 IPR023267 IPR029063 PF01189 PR02008 PS51686 PTHR22807 PTHR22807:SF16 SSF53335	10
Lj4g3v1061080.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b-like [Cicer arietinum] gi\|502153519\|ref\|XP_004509368.1\|	Domains G3DSA:3.40.50.150 IPR001678 IPR023267 IPR023269 IPR029063 PF01189 PR02008 PR02010 PS51686 PTHR22807 PTHR22807:SF16 SSF53335 cd02440	13
Lj6g3v0550640.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA (cytosine-5-)-methyltransferase NSUN2 [Medicago truncatula] gi\|357463293\|ref\|XP_003601928.1\|	Domains G3DSA:3.40.50.150 IPR001678 IPR018314 IPR023267 IPR023270 IPR029063 PF01189 PR02008 PR02011 PS01153 PS51686 PTHR22808 PTHR22808:SF1 SSF53335	14
Lj6g3v0550640.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase-like [Glycine max] gi\|356538146\|ref\|XP_003537565.1\|	Domains G3DSA:3.40.50.150 IPR001678 IPR018314 IPR023267 IPR023270 IPR029063 PF01189 PR02008 PR02011 PS01153 PS51686 PTHR22808 PTHR22808:SF1 SSF53335 mobidb-lite	15
Lj6g3v0727750.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi\|22328952\|ref\|NP_194390.2\|	Domains Coil G3DSA:3.40.50.150 IPR001678 IPR018314 IPR023267 IPR023273 IPR029063 IPR031341 PF01189 PF17125 PR02008 PR02012 PS01153 PS51686 PTHR22807 PTHR22807:SF30 SSF53335 mobidb-lite	18
Lj6g3v0727750.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	AT5G55920 [Arabidopsis thaliana] gi\|222423014\|dbj\|BAH19490.1\|	Domains G3DSA:3.40.50.150 IPR001678 IPR011023 IPR018314 IPR023267 IPR029063 PF01189 PR02008 PS01153 PS51686 PTHR22807 PTHR22807:SF30 SSF53335 TIGR00446 mobidb-lite	15
LotjaGi1g1v0015100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribosomal RNA small subunit methyltransferase B; TAIR: AT3G13180.1 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein; Swiss-Prot: sp\|P94464\|RSMB_BACSU Probable ribosomal RNA small subunit methyltransferase B; TrEMBL-Plants: tr\|G7KEH7\|G7KEH7_MEDTR Ribosomal RNA small subunit methyltransferase B; Found in the gene: LotjaGi1g1v0015100	Domains G3DSA:1.10.940.10 G3DSA:3.40.50.150 IPR001678 IPR004573 IPR006027 IPR023267 IPR023268 IPR029063 IPR035926 PF01029 PF01189 PR02008 PR02009 PS51686 PTHR22807 PTHR22807:SF61 SSF48013 SSF53335 TIGR00563 cd02440 mobidb-lite	21
LotjaGi1g1v0015100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribosomal RNA small subunit methyltransferase B; TAIR: AT3G13180.1 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein; Swiss-Prot: sp\|Q8EKR0\|RSMB_SHEON Ribosomal RNA small subunit methyltransferase B; TrEMBL-Plants: tr\|V7B964\|V7B964_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0015100	Domains G3DSA:3.40.50.150 IPR001678 IPR023267 IPR029063 PF01189 PR02008 PS51686 PTHR22807 PTHR22807:SF61 SSF53335	10
LotjaGi1g1v0015100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribosomal RNA small subunit methyltransferase B; TAIR: AT3G13180.1 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein; Swiss-Prot: sp\|P94464\|RSMB_BACSU Probable ribosomal RNA small subunit methyltransferase B; TrEMBL-Plants: tr\|I1JJK1\|I1JJK1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0015100	Domains G3DSA:1.10.940.10 G3DSA:3.40.50.150 IPR001678 IPR004573 IPR006027 IPR023267 IPR023268 IPR029063 IPR035926 PF01029 PF01189 PR02008 PR02009 PS51686 PTHR22807 PTHR22807:SF61 SSF48013 SSF53335 TIGR00563 cd02440	20
LotjaGi1g1v0043900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribosomal RNA small subunit methyltransferase B; TAIR: AT1G06560.1 NOL1/NOP2/sun family protein; Swiss-Prot: sp\|Q7TS68\|NSUN6_MOUSE Putative methyltransferase NSUN6; TrEMBL-Plants: tr\|K7M4N7\|K7M4N7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0043900	Domains G3DSA:2.30.130.70 IPR001678 IPR002478 IPR015947 IPR018314 IPR023267 IPR029063 PF01189 PF01472 PR02008 PS01153 PS50890 PS51686 PTHR22807 PTHR22807:SF34 SSF53335 SSF88697 mobidb-lite	18
LotjaGi1g1v0369100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribosomal RNA small subunit methyltransferase B; TAIR: AT5G26180.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp\|Q96P11\|NSUN5_HUMAN Probable 28S rRNA (cytosine-C(5))-methyltransferase; TrEMBL-Plants: tr\|I1JTZ9\|I1JTZ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0369100	Domains G3DSA:3.30.70.1170 G3DSA:3.40.50.150 IPR001678 IPR023267 IPR029063 PF01189 PR02008 PS51686 PTHR22807 PTHR22807:SF4 SSF53335 cd02440 mobidb-lite	13
LotjaGi4g1v0129200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein; TAIR: AT5G66180.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp\|O13935\|TRM4B_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b; TrEMBL-Plants: tr\|I1JCG2\|I1JCG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0129200	Domains IPR001678 IPR023267 IPR023269 IPR029063 PF01189 PR02008 PR02010 PS51686 PTHR22807 PTHR22807:SF16 SSF53335 cd02440	12
LotjaGi4g1v0129200.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein; TAIR: AT5G66180.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp\|O13935\|TRM4B_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b; TrEMBL-Plants: tr\|I1JCG2\|I1JCG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0129200	Domains IPR001678 IPR023267 IPR023269 IPR029063 PF01189 PR02008 PR02010 PS51686 PTHR22807 PTHR22807:SF16 SSF53335 cd02440	12
LotjaGi4g1v0395400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribosomal RNA small subunit methyltransferase F; TAIR: AT2G22400.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp\|Q5ZLV4\|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase; TrEMBL-Plants: tr\|A0A0B2PBC2\|A0A0B2PBC2_GLYSO tRNA (Cytosine(34)-C(5))-methyltransferase; Found in the gene: LotjaGi4g1v0395400	Domains IPR001678 IPR018314 IPR023267 IPR023270 IPR029063 PF01189 PR02008 PR02011 PS01153 PS51686 PTHR22808 PTHR22808:SF22 SSF53335 mobidb-lite	14
LotjaGi6g1v0092300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribosomal RNA small subunit methyltransferase F; TAIR: AT2G22400.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp\|Q5ZLV4\|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase; TrEMBL-Plants: tr\|A0A0B2SJ66\|A0A0B2SJ66_GLYSO tRNA (Cytosine(34)-C(5))-methyltransferase; Found in the gene: LotjaGi6g1v0092300	Domains IPR001678 IPR018314 IPR023267 IPR023270 IPR029063 PF01189 PR02008 PR02011 PS01153 PS51686 PTHR22808 PTHR22808:SF22 SSF53335 mobidb-lite	14
LotjaGi6g1v0092300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribosomal RNA small subunit methyltransferase F; TAIR: AT2G22400.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp\|Q5ZLV4\|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase; TrEMBL-Plants: tr\|A0A1J7IQK7\|A0A1J7IQK7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0092300	Domains IPR001678 IPR018314 IPR023267 IPR023270 IPR029063 PF01189 PR02008 PR02011 PS01153 PS51686 PTHR22808 PTHR22808:SF22 SSF53335 mobidb-lite	14
LotjaGi6g1v0092300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribosomal RNA small subunit methyltransferase F; TAIR: AT2G22400.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp\|Q5ZLV4\|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase; TrEMBL-Plants: tr\|I1LNJ4\|I1LNJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0092300	Domains IPR001678 IPR018314 IPR023267 IPR023270 IPR029063 PF01189 PR02008 PR02011 PS01153 PS51686 PTHR22808 PTHR22808:SF22 SSF53335 mobidb-lite	14
LotjaGi6g1v0141300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribosomal RNA small subunit methyltransferase b; TAIR: AT4G26600.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp\|Q922K7\|NOP2_MOUSE Probable 28S rRNA (cytosine-C(5))-methyltransferase; TrEMBL-Plants: tr\|I1N087\|I1N087_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0141300	Domains Coil G3DSA:3.30.70.3130 G3DSA:3.40.50.150 IPR001678 IPR011023 IPR018314 IPR023267 IPR023273 IPR029063 IPR031341 PF01189 PF17125 PR02008 PR02012 PS01153 PS51686 PTHR22807 PTHR22807:SF59 SSF53335 TIGR00446 mobidb-lite	21

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	4.17