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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1798720 |
| Transcript ID | Lj1g3v1798720.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Glutamate receptor 2.8 [Medicago truncatula] gi|357465943|ref|XP_003603256.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | – | – | |
| Phobius | 12 | 31 | 20 | – | – | |
| TMHMM | 12 | 31 | 20 | – | – | |
| PANTHER | 13 | 659 | 647 | 0 | – | |
| PANTHER | 13 | 659 | 647 | 0 | – | |
| Phobius | 32 | 593 | 562 | – | – | |
| SUPERFAMILY | 38 | 449 | 412 | 2.29E-69 | ||
| CDD | 41 | 425 | 385 | 2.92E-113 | – | |
| Pfam | 59 | 407 | 349 | 6.60E-60 | ||
| Gene3D | 62 | 157 | 96 | 7.20E-18 | – | |
| Gene3D | 158 | 305 | 148 | 5.60E-23 | – | |
| Gene3D | 306 | 388 | 83 | 7.20E-18 | – | |
| Gene3D | 400 | 415 | 16 | 1.60E-27 | – | |
| SUPERFAMILY | 443 | 604 | 162 | 2.53E-31 | – | |
| Gene3D | 447 | 593 | 147 | 1.60E-27 | – | |
| SMART | 468 | 657 | 190 | 8.10E-07 | ||
| Pfam | 486 | 578 | 93 | 1.00E-10 | ||
| Phobius | 594 | 616 | 23 | – | – | |
| Gene3D | 594 | 659 | 66 | 1.20E-12 | – | |
| TMHMM | 594 | 616 | 23 | – | – | |
| Pfam | 596 | 659 | 64 | 7.20E-11 | ||
| Phobius | 617 | 627 | 11 | – | – | |
| Phobius | 628 | 645 | 18 | – | – | |
| Phobius | 646 | 659 | 14 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ionotropic glutamate receptor activity | Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts. | ||
| Molecular function | Ligand-gated ion channel activity | Enables the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of Lj1g3v1798720.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1798720.2, powered by CORGI.
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