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Lj1g3v2126130.1

Overview

Field Value
Gene ID Lj1g3v2126130
Transcript ID Lj1g3v2126130.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic-like [Glycine max] gi|356518710|ref|XP_003528021.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF53448
101 382 282 4.46E-78
IPR029044
PANTHER
PTHR22572
102 534 433 0 –
PANTHER
PTHR22572:SF110
102 534 433 0 –
TIGRFAM
TIGR02091
102 498 397 2.00E-142
IPR011831
Pfam
PF00483
103 380 278 4.50E-80
IPR005835
CDD
cd02508
104 365 262 5.92E-86 –
Gene3D
G3DSA:3.90.550.10
104 450 347 6.80E-71
IPR029044
ProSitePatterns
PS00808
107 126 20 –
IPR005836
ProSitePatterns
PS00809
198 206 9 –
IPR005836
ProSitePatterns
PS00810
313 323 11 –
IPR005836
SUPERFAMILY
SSF51161
396 534 139 8.33E-24
IPR011004
CDD
cd04651
402 528 127 6.50E-30 –
Gene3D
G3DSA:2.160.10.10
474 533 60 9.40E-04 –
SUPERFAMILY
SSF53448
479 496 18 4.46E-78
IPR029044

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005978
Biological process Glycogen biosynthetic process The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Subterm of
GO:0008878
Molecular function Glucose-1-phosphate adenylyltransferase activity Catalysis of the reaction: alpha-D-glucose 1-phosphate + ATP = ADP-glucose + diphosphate.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0016779
Molecular function Nucleotidyltransferase activity Catalysis of the transfer of a nucleotidyl group to a reactant.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj1g3v2126130.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2126130.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.