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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011004
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 67 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 7.836s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0127619.1
n.a. PREDICTED: UDP-3-O-[3]-hydroxymyristoyl] gi|356495807|ref|XP_003516764.1| chr0 57553357 57555226 -
2 domain predictions
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Lj0g3v0139179.1
n.a. PREDICTED: translation initiation factor eIF-2B subunit epsilon-like [Cicer arietinum] gi|502124571|ref|XP_004498583.1| chr0 63721951 63731186 +
2 domain predictions
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Lj0g3v0205559.1
n.a. Bifunctional protein aas [Medicago truncatula] gi|357454395|ref|XP_003597478.1| chr0 102262923 102270182 +
2 domain predictions
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Lj0g3v0205569.2
n.a. n.a. chr0 102265269 102271500 -
2 domain predictions
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Lj0g3v0205569.3
n.a. n.a. chr0 102265269 102271500 -
2 domain predictions
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Lj0g3v0205579.1
n.a. Bifunctional protein aas [Medicago truncatula] gi|357454395|ref|XP_003597478.1| chr0 102268403 102271500 +
2 domain predictions
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Lj0g3v0357059.1
n.a. PREDICTED: serine acetyltransferase 3, mitochondrial-like [Cicer arietinum] gi|502099520|ref|XP_004491499.1| chr0 188000767 188002500 -
2 domain predictions
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Lj1g3v0415810.1
n.a. PREDICTED: mannose-1-phosphate guanyltransferase alpha-like [Cicer arietinum] gi|502133994|ref|XP_004501963.1| chr1 5534392 5539669 +
2 domain predictions
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Lj1g3v2124850.1
n.a. PREDICTED: gamma carbonic anhydrase 1, mitochondrial-like [Cucumis sativus] gi|449469963|ref|XP_004152688.1| chr1 25415565 25419363 +
2 domain predictions
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Lj1g3v2126130.1
n.a. PREDICTED: glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic-like [Glycine max] gi|356518710|ref|XP_003528021.1| chr1 25539234 25543269 -
2 domain predictions
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Lj1g3v3384550.1
n.a. PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1-like [Glycine max] gi|356517038|ref|XP_003527197.1| chr1 38899867 38904068 +
2 domain predictions
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Lj1g3v3598300.1
n.a. PREDICTED: UDP-3-O-[3]-hydroxymyristoyl] gi|356495807|ref|XP_003516764.1| chr1 41443073 41450705 -
2 domain predictions
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Lj1g3v4819990.1
n.a. PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic-like [Glycine max] gi|356503982|ref|XP_003520778.1| chr1 58178441 58183906 +
2 domain predictions
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Lj1g3v4819990.2
n.a. PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic-like [Glycine max] gi|356503982|ref|XP_003520778.1| chr1 58178441 58183906 +
2 domain predictions
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Lj1g3v4819990.3
n.a. Glucose-1-phosphate adenylyltransferase [Medicago truncatula] gi|357511621|ref|XP_003626099.1| chr1 58182773 58183906 +
2 domain predictions
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Lj2g3v0911690.1
n.a. PREDICTED: acyl-[acyl]-carrier-protein] gi|356523129|ref|XP_003530194.1| chr2 13870777 13876180 +
2 domain predictions
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Lj2g3v1731280.1
n.a. Transcription factor APFI-like protein [Medicago truncatula] gi|357483549|ref|XP_003612061.1| chr2 26712878 26715548 -
2 domain predictions
 –
Lj2g3v1731290.1
n.a. PREDICTED: gamma carbonic anhydrase 1, mitochondrial-like [Cicer arietinum] gi|502161184|ref|XP_004512067.1| chr2 26713210 26715931 -
2 domain predictions
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Lj2g3v2657260.1
n.a. PREDICTED: probable mannose-1-phosphate guanylyltransferase 1-like [Brachypodium distachyon] gi|357112936|ref|XP_003558261.1| chr2 35759216 35759958 +
2 domain predictions
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Lj2g3v3271230.1
n.a. Serine acetyltransferase [Medicago truncatula] gi|357494997|ref|XP_003617787.1| chr2 41722037 41723212 -
2 domain predictions
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Lj2g3v3337310.1
n.a. PREDICTED: glucose-1-phosphate adenylyltransferase small subunit, chloroplastic-like isoform 1 [Glycine max] gi|356501685|ref|XP_003519654.1| chr2 42299801 42304132 +
2 domain predictions
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Lj3g3v2400830.1
n.a. PREDICTED: serine acetyltransferase 5-like [Cicer arietinum] gi|502157027|ref|XP_004510733.1| chr3 29805940 29807323 -
2 domain predictions
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Lj3g3v3271550.1
n.a. Bifunctional protein aas [Medicago truncatula] gi|357454395|ref|XP_003597478.1| chr3 40213521 40218402 -
2 domain predictions
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Lj3g3v3362020.1
n.a. PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1-like [Glycine max] gi|356545193|ref|XP_003541029.1| chr3 41304490 41309780 -
2 domain predictions
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Lj4g3v2400900.1
n.a. PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Cicer arietinum] gi|502149899|ref|XP_004507704.1| chr4 33219803 33226861 -
2 domain predictions
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Lj4g3v2916460.1
n.a. PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial-like [Cicer arietinum] gi|502139375|ref|XP_004503744.1| chr4 38781509 38784495 -
2 domain predictions
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Lj4g3v2916470.1
n.a. PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial-like [Cicer arietinum] gi|502139375|ref|XP_004503744.1| chr4 38784073 38784598 -
2 domain predictions
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Lj5g3v2045280.1
n.a. PREDICTED: translation initiation factor eIF-2B subunit epsilon-like [Cicer arietinum] gi|502124571|ref|XP_004498583.1| chr5 29050243 29059571 -
2 domain predictions
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Lj6g3v0776100.1
n.a. PREDICTED: serine acetyltransferase 3, mitochondrial-like [Cicer arietinum] gi|502146996|ref|XP_004506688.1| chr6 7449157 7451019 +
2 domain predictions
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Lj6g3v0776110.1
n.a. PREDICTED: serine acetyltransferase 1, chloroplastic-like [Glycine max] gi|356524352|ref|XP_003530793.1| chr6 7449438 7450383 +
2 domain predictions
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LotjaGi1g1v0010500.1
n.a. Glucose-1-phosphate adenylyltransferase; TAIR: AT5G48300.1 ADP glucose pyrophosphorylase 1; Swiss-Prot: sp|Q9M462|GLGS_BRANA Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic; TrEMBL-Plants: tr|I3SW82|I3SW82_LOTJA Glucose-1-phosphate adenylyltransferase; Found in the gene: LotjaGi1g1v0010500 LjG1.1_chr1 1299654 1304423 -
2 domain predictions
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LotjaGi1g1v0010500.2
n.a. Glucose-1-phosphate adenylyltransferase; TAIR: AT5G48300.1 ADP glucose pyrophosphorylase 1; Swiss-Prot: sp|Q9M462|GLGS_BRANA Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic; TrEMBL-Plants: tr|I3SW82|I3SW82_LOTJA Glucose-1-phosphate adenylyltransferase; Found in the gene: LotjaGi1g1v0010500 LjG1.1_chr1 1300174 1304132 -
2 domain predictions
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LotjaGi1g1v0017400.1
n.a. Serine acetyltransferase; TAIR: AT3G13110.1 serine acetyltransferase 2;2; Swiss-Prot: sp|Q39218|SAT3_ARATH Serine acetyltransferase 3, mitochondrial; TrEMBL-Plants: tr|A0A1J7HSB9|A0A1J7HSB9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0017400 LjG1.1_chr1 2180303 2183018 +
2 domain predictions
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LotjaGi1g1v0420300.1
n.a. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; TAIR: AT1G19580.1 gamma carbonic anhydrase 1; Swiss-Prot: sp|Q9FWR5|GCA1_ARATH Gamma carbonic anhydrase 1, mitochondrial; TrEMBL-Plants: tr|I3T7V2|I3T7V2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0420300 LjG1.1_chr1 91389466 91394043 +
2 domain predictions
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LotjaGi1g1v0421100.1
n.a. Glucose-1-phosphate adenylyltransferase; TAIR: AT1G27680.1 ADPGLC-PPase large subunit; Swiss-Prot: sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic; TrEMBL-Plants: tr|I3S8A5|I3S8A5_LOTJA Glucose-1-phosphate adenylyltransferase; Found in the gene: LotjaGi1g1v0421100 LjG1.1_chr1 91488633 91496300 -
2 domain predictions
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LotjaGi1g1v0421100.2
n.a. Glucose-1-phosphate adenylyltransferase; TAIR: AT1G27680.1 ADPGLC-PPase large subunit; Swiss-Prot: sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic; TrEMBL-Plants: tr|I3S8A5|I3S8A5_LOTJA Glucose-1-phosphate adenylyltransferase; Found in the gene: LotjaGi1g1v0421100 LjG1.1_chr1 91492267 91492690 -
2 domain predictions
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LotjaGi1g1v0557100.2
n.a. UTP--glucose-1-phosphate uridylyltransferase; TAIR: AT3G03250.1 UDP-GLUCOSE PYROPHOSPHORYLASE 1; Swiss-Prot: sp|P19595|UGPA_SOLTU UTP--glucose-1-phosphate uridylyltransferase; TrEMBL-Plants: tr|A0A1J7IIE7|A0A1J7IIE7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0557100 LjG1.1_chr1 108894360 108896384 -
2 domain predictions
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LotjaGi1g1v0566100.1
n.a. Glucose-1-phosphate adenylyltransferase; TAIR: AT4G39210.1 Glucose-1-phosphate adenylyltransferase family protein; Swiss-Prot: sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 1; TrEMBL-Plants: tr|I1K764|I1K764_SOYBN Glucose-1-phosphate adenylyltransferase; Found in the gene: LotjaGi1g1v0566100 LjG1.1_chr1 109954739 109959623 +
2 domain predictions
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LotjaGi1g1v0566100.2
n.a. Glucose-1-phosphate adenylyltransferase; TAIR: AT4G39210.1 Glucose-1-phosphate adenylyltransferase family protein; Swiss-Prot: sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 1; TrEMBL-Plants: tr|I1K764|I1K764_SOYBN Glucose-1-phosphate adenylyltransferase; Found in the gene: LotjaGi1g1v0566100 LjG1.1_chr1 109955555 109959258 +
2 domain predictions
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LotjaGi1g1v0566100.3
n.a. Glucose-1-phosphate adenylyltransferase; TAIR: AT4G39210.1 Glucose-1-phosphate adenylyltransferase family protein; Swiss-Prot: sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 1; TrEMBL-Plants: tr|I1K764|I1K764_SOYBN Glucose-1-phosphate adenylyltransferase; Found in the gene: LotjaGi1g1v0566100 LjG1.1_chr1 109956190 109959258 +
2 domain predictions
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LotjaGi1g1v0566100.4
n.a. Glucose-1-phosphate adenylyltransferase; TAIR: AT2G21590.1 Glucose-1-phosphate adenylyltransferase family protein; Swiss-Prot: sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 1; TrEMBL-Plants: tr|I1K764|I1K764_SOYBN Glucose-1-phosphate adenylyltransferase; Found in the gene: LotjaGi1g1v0566100 LjG1.1_chr1 109958117 109959258 +
2 domain predictions
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LotjaGi1g1v0753300.1
n.a. Glucose-1-phosphate adenylyltransferase; TAIR: AT1G27680.1 ADPGLC-PPase large subunit; Swiss-Prot: sp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic; TrEMBL-Plants: tr|K7KGH6|K7KGH6_SOYBN Glucose-1-phosphate adenylyltransferase; Found in the gene: LotjaGi1g1v0753300 LjG1.1_chr1 132621152 132626791 +
2 domain predictions
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LotjaGi1g1v0753300.2
n.a. Glucose-1-phosphate adenylyltransferase; TAIR: AT1G27680.1 ADPGLC-PPase large subunit; Swiss-Prot: sp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic; TrEMBL-Plants: tr|I1NBK6|I1NBK6_SOYBN Glucose-1-phosphate adenylyltransferase; Found in the gene: LotjaGi1g1v0753300 LjG1.1_chr1 132621751 132626256 +
2 domain predictions
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LotjaGi2g1v0231800.1
n.a. Acyl-[acyl]-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; TAIR: AT4G29540.2 bacterial transferase hexapeptide repeat-containing protein; Swiss-Prot: sp|Q9SU91|LPXA_ARATH Probable acyl-[acyl]-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial; TrEMBL-Plants: tr|A0A072UJ42|A0A072UJ42_MEDTR UDP-N-acetylglucosamine acyltransferase; Found in the gene: LotjaGi2g1v0231800 LjG1.1_chr2 69092338 69098091 +
2 domain predictions
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LotjaGi2g1v0356400.1
n.a. Serine acetyltransferase; TAIR: AT4G35640.1 serine acetyltransferase 3;2; Swiss-Prot: sp|Q8W2B8|SAT4_ARATH Serine acetyltransferase 4; TrEMBL-Plants: tr|K7LNN3|K7LNN3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0356400 LjG1.1_chr2 83287102 83291604 -
2 domain predictions
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LotjaGi2g1v0387900.1
n.a. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; TAIR: AT1G19580.1 gamma carbonic anhydrase 1; Swiss-Prot: sp|Q9FWR5|GCA1_ARATH Gamma carbonic anhydrase 1, mitochondrial; TrEMBL-Plants: tr|A0A151TIB2|A0A151TIB2_CAJCA Uncharacterized protein DDB-G0288155; Found in the gene: LotjaGi2g1v0387900 LjG1.1_chr2 88401501 88405221 -
2 domain predictions
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LotjaGi3g1v0292200.2
n.a. Long-chain-fatty-acid--AMP ligase FadD28; TAIR: AT1G77220.1 organic solute transporter ostalpha protein (DUF300); Swiss-Prot: sp|Q8YK97|LILIP_NOSS1 Linolenate 9R-lipoxygenase; TrEMBL-Plants: tr|A0A0B2RJD7|A0A0B2RJD7_GLYSO Long-chain-fatty-acid--AMP ligase FadD28; Found in the gene: LotjaGi3g1v0292200 LjG1.1_chr3 59515704 59518395 -
2 domain predictions
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LotjaGi3g1v0292200.3
n.a. AMP-dependent synthetase and ligase family protein; TAIR: AT1G20480.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp|B2HIM0|FAA28_MYCMM Long-chain-fatty-acid--AMP ligase FadD28; TrEMBL-Plants: tr|A0A0B2RJD7|A0A0B2RJD7_GLYSO Long-chain-fatty-acid--AMP ligase FadD28; Found in the gene: LotjaGi3g1v0292200 LjG1.1_chr3 59515704 59523564 -
2 domain predictions
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LotjaGi3g1v0392000.1
n.a. Serine acetyltransferase; TAIR: AT5G56760.1 serine acetyltransferase 1;1; Swiss-Prot: sp|Q42538|SAT5_ARATH Serine acetyltransferase 5; TrEMBL-Plants: tr|A0A072TYU4|A0A072TYU4_MEDTR Serine acetyltransferase; Found in the gene: LotjaGi3g1v0392000 LjG1.1_chr3 79052752 79058757 -
2 domain predictions
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LotjaGi3g1v0392000.4
n.a. Serine acetyltransferase; TAIR: AT5G56760.1 serine acetyltransferase 1;1; Swiss-Prot: sp|Q42538|SAT5_ARATH Serine acetyltransferase 5; TrEMBL-Plants: tr|A0A072TYU4|A0A072TYU4_MEDTR Serine acetyltransferase; Found in the gene: LotjaGi3g1v0392000 LjG1.1_chr3 79057446 79058622 -
2 domain predictions
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