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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2139390 |
| Transcript ID | Lj1g3v2139390.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: auxin-induced protein 5NG4-like [Glycine max] gi|356538248|ref|XP_003537616.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 205 | 205 | 7.00E-126 | ||
| Phobius | 1 | 7 | 7 | – | – | |
| Phobius | 1 | 20 | 20 | – | – | |
| PANTHER | 1 | 205 | 205 | 7.00E-126 | – | |
| TMHMM | 7 | 29 | 23 | – | – | |
| Phobius | 8 | 15 | 8 | – | – | |
| Pfam | 16 | 145 | 130 | 8.10E-12 | ||
| Phobius | 16 | 20 | 5 | – | – | |
| Phobius | 21 | 38 | 18 | – | – | |
| TMHMM | 39 | 58 | 20 | – | – | |
| Phobius | 39 | 57 | 19 | – | – | |
| SUPERFAMILY | 42 | 137 | 96 | 1.31E-08 | – | |
| Phobius | 58 | 68 | 11 | – | – | |
| TMHMM | 65 | 84 | 20 | – | – | |
| Phobius | 69 | 91 | 23 | – | – | |
| Phobius | 92 | 102 | 11 | – | – | |
| TMHMM | 99 | 121 | 23 | – | – | |
| Phobius | 103 | 119 | 17 | – | – | |
| Phobius | 120 | 130 | 11 | – | – | |
| Phobius | 131 | 151 | 21 | – | – | |
| Phobius | 152 | 183 | 32 | – | – | |
| TMHMM | 182 | 204 | 23 | – | – | |
| Phobius | 184 | 204 | 21 | – | – | |
| Phobius | 205 | 205 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of Lj1g3v2139390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2139390.1, powered by CORGI.
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