Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v2143370.2

Overview

Field Value
Gene ID Lj1g3v2143370
Transcript ID Lj1g3v2143370.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: methyltransferase-like protein 17, mitochondrial-like [Glycine max] gi|356546324|ref|XP_003541577.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21320
8 277 270 7.60E-168
IPR007533
PANTHER
PTHR21320:SF0
8 277 270 7.60E-168 –
Pfam
PF09243
111 363 253 6.10E-49
IPR015324
Gene3D
G3DSA:3.40.50.150
114 265 152 2.60E-06
IPR029063
SUPERFAMILY
SSF53335
125 262 138 1.58E-11
IPR029063
PANTHER
PTHR21320
293 369 77 7.60E-168
IPR007533
PANTHER
PTHR21320:SF0
293 369 77 7.60E-168 –
MobiDBLite
mobidb-lite
510 531 22 – –
PANTHER
PTHR21320
530 600 71 7.60E-168
IPR007533
PANTHER
PTHR21320:SF0
530 600 71 7.60E-168 –
Pfam
PF09243
532 596 65 2.00E-04
IPR015324

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005507
Molecular function Copper ion binding Interacting selectively and non-covalently with copper (Cu) ions.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

Genome browser

LORE1 insertions 30

Expression data

Expression pattern

Expression pattern of Lj1g3v2143370.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2143370.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.