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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2173100 |
| Transcript ID | Lj1g3v2173100.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ER lumen protein retaining receptor-like [Glycine max] gi|356517923|ref|XP_003527635.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | – | – | |
| TMHMM | 24 | 43 | 20 | – | – | |
| Phobius | 24 | 42 | 19 | – | – | |
| Phobius | 43 | 47 | 5 | – | – | |
| PANTHER | 45 | 271 | 227 | 7.30E-171 | – | |
| PANTHER | 45 | 271 | 227 | 7.30E-171 | ||
| TMHMM | 48 | 65 | 18 | – | – | |
| PRINTS | 48 | 67 | 20 | 1.70E-15 | ||
| Phobius | 48 | 68 | 21 | – | – | |
| Phobius | 69 | 79 | 11 | – | – | |
| Pfam | 72 | 214 | 143 | 4.60E-39 | ||
| PRINTS | 75 | 95 | 21 | 1.70E-15 | ||
| Phobius | 80 | 98 | 19 | – | – | |
| Phobius | 99 | 103 | 5 | – | – | |
| TMHMM | 102 | 121 | 20 | – | – | |
| Phobius | 104 | 123 | 20 | – | – | |
| Phobius | 124 | 134 | 11 | – | – | |
| Phobius | 135 | 152 | 18 | – | – | |
| TMHMM | 136 | 153 | 18 | – | – | |
| Phobius | 153 | 163 | 11 | – | – | |
| Phobius | 164 | 181 | 18 | – | – | |
| PRINTS | 166 | 186 | 21 | 1.70E-15 | ||
| Phobius | 182 | 192 | 11 | – | – | |
| PRINTS | 188 | 202 | 15 | 1.70E-15 | ||
| TMHMM | 193 | 215 | 23 | – | – | |
| Phobius | 193 | 214 | 22 | – | – | |
| PRINTS | 202 | 220 | 19 | 1.70E-15 | ||
| Phobius | 215 | 233 | 19 | – | – | |
| TMHMM | 225 | 247 | 23 | – | – | |
| Phobius | 234 | 255 | 22 | – | – | |
| Phobius | 256 | 272 | 17 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein retention in ER lumen | The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ER retention sequence binding | Interacting selectively and non-covalently with an endoplasmic reticulum (ER) retention sequence, a specific peptide sequence that ensures a protein is retained within the ER. |
Expression pattern of Lj1g3v2173100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2173100.1, powered by CORGI.
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