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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2315450 |
| Transcript ID | Lj1g3v2315450.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: vacuolar cation/proton exchanger 3-like [Glycine max] gi|356521008|ref|XP_003529150.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 66 | 66 | – | – | |
| PANTHER | 10 | 442 | 433 | 0 | – | |
| PANTHER | 10 | 442 | 433 | 0 | – | |
| TIGRFAM | 59 | 425 | 367 | 3.60E-147 | ||
| Phobius | 67 | 86 | 20 | – | – | |
| TMHMM | 75 | 97 | 23 | – | – | |
| TIGRFAM | 78 | 425 | 348 | 2.70E-92 | ||
| Phobius | 87 | 91 | 5 | – | – | |
| Phobius | 92 | 108 | 17 | – | – | |
| Pfam | 94 | 252 | 159 | 3.00E-20 | ||
| Phobius | 109 | 128 | 20 | – | – | |
| TMHMM | 125 | 147 | 23 | – | – | |
| Phobius | 129 | 147 | 19 | – | – | |
| Phobius | 148 | 158 | 11 | – | – | |
| Phobius | 159 | 183 | 25 | – | – | |
| TMHMM | 159 | 181 | 23 | – | – | |
| Phobius | 184 | 194 | 11 | – | – | |
| Phobius | 195 | 214 | 20 | – | – | |
| TMHMM | 196 | 218 | 23 | – | – | |
| Phobius | 215 | 233 | 19 | – | – | |
| TMHMM | 230 | 252 | 23 | – | – | |
| Phobius | 234 | 254 | 21 | – | – | |
| Phobius | 255 | 274 | 20 | – | – | |
| TMHMM | 275 | 297 | 23 | – | – | |
| Phobius | 275 | 297 | 23 | – | – | |
| Pfam | 282 | 420 | 139 | 5.00E-19 | ||
| Phobius | 298 | 316 | 19 | – | – | |
| Phobius | 317 | 340 | 24 | – | – | |
| TMHMM | 318 | 340 | 23 | – | – | |
| Phobius | 341 | 351 | 11 | – | – | |
| TMHMM | 350 | 372 | 23 | – | – | |
| Phobius | 352 | 373 | 22 | – | – | |
| Phobius | 374 | 378 | 5 | – | – | |
| TMHMM | 379 | 400 | 22 | – | – | |
| Phobius | 379 | 400 | 22 | – | – | |
| Phobius | 401 | 406 | 6 | – | – | |
| Phobius | 407 | 427 | 21 | – | – | |
| TMHMM | 410 | 432 | 23 | – | – | |
| Phobius | 428 | 451 | 24 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Calcium ion transport | The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Molecular function | Calcium:proton antiporter activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + H+(out) = Ca2+(out) + H+(in). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj1g3v2315450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2315450.1, powered by CORGI.
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