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Lj1g3v2461240.1

Overview

Field Value
Gene ID Lj1g3v2461240
Transcript ID Lj1g3v2461240.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF55945
1 36 36 1.88E-06 –
Gene3D
G3DSA:3.30.310.10
1 33 33 3.20E-09
IPR012295
PANTHER
PTHR10126
1 119 119 1.40E-96
IPR000814
PANTHER
PTHR10126:SF23
1 119 119 1.40E-96 –
SUPERFAMILY
SSF55945
34 121 88 3.14E-29 –
Pfam
PF00352
34 116 83 1.30E-30
IPR000814
Gene3D
G3DSA:3.30.310.10
34 118 85 2.60E-34
IPR012295
PRINTS
PR00686
37 53 17 1.80E-28
IPR000814
PRINTS
PR00686
61 76 16 1.80E-28
IPR000814
PRINTS
PR00686
80 96 17 1.80E-28
IPR000814

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006352
Biological process DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
Subterm of
Part of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj1g3v2461240.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2461240.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.