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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR012295
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 29 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.326s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2036740.1
n.a. PREDICTED: beta-adaptin-like protein A-like isoform X2 [Cicer arietinum] gi|502132000|ref|XP_004501190.1| chr1 24089767 24094140 -
2 domain predictions
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Lj1g3v2036740.2
n.a. PREDICTED: beta-adaptin-like protein A-like isoform X1 [Cicer arietinum] gi|502131998|ref|XP_004501189.1| chr1 24089767 24097662 -
2 domain predictions
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Lj1g3v2450170.1
n.a. PREDICTED: TATA-box-binding protein-like [Glycine max] gi|356571702|ref|XP_003554013.1| chr1 28643971 28646272 +
2 domain predictions
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Lj1g3v2461240.1
n.a. n.a. chr1 28678804 28681305 -
2 domain predictions
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Lj3g3v1411740.1
n.a. TATA-box-binding protein [Glycine max] gi|351727953|ref|NP_001238202.1| chr3 18244703 18250598 -
2 domain predictions
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Lj3g3v3579360.2
n.a. PREDICTED: beta-adaptin-like protein B-like [Cicer arietinum] gi|502144336|ref|XP_004505660.1| chr3 43470951 43478699 +
2 domain predictions
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LotjaGi1g1v0399500.1
n.a. Beta-adaptin-like protein; TAIR: AT5G11490.1 adaptin family protein; Swiss-Prot: sp|Q9LDK9|APBLA_ARATH Beta-adaptin-like protein A; TrEMBL-Plants: tr|A0A072V2B0|A0A072V2B0_MEDTR Beta-adaptin-like protein; Found in the gene: LotjaGi1g1v0399500 LjG1.1_chr1 88660325 88668483 +
2 domain predictions
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LotjaGi1g1v0399500.2
n.a. Beta-adaptin-like protein; TAIR: AT5G11490.1 adaptin family protein; Swiss-Prot: sp|Q9LDK9|APBLA_ARATH Beta-adaptin-like protein A; TrEMBL-Plants: tr|A0A151TDQ2|A0A151TDQ2_CAJCA Beta-adaptin-like protein; Found in the gene: LotjaGi1g1v0399500 LjG1.1_chr1 88660988 88667910 +
2 domain predictions
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LotjaGi1g1v0399500.3
n.a. Beta-adaptin-like protein; TAIR: AT5G11490.1 adaptin family protein; Swiss-Prot: sp|Q9LDK9|APBLA_ARATH Beta-adaptin-like protein A; TrEMBL-Plants: tr|A0A151TDQ2|A0A151TDQ2_CAJCA Beta-adaptin-like protein; Found in the gene: LotjaGi1g1v0399500 LjG1.1_chr1 88661112 88667910 +
2 domain predictions
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LotjaGi1g1v0399500.4
n.a. Beta-adaptin-like protein; TAIR: AT5G11490.1 adaptin family protein; Swiss-Prot: sp|Q9LDK9|APBLA_ARATH Beta-adaptin-like protein A; TrEMBL-Plants: tr|A0A151TDQ2|A0A151TDQ2_CAJCA Beta-adaptin-like protein; Found in the gene: LotjaGi1g1v0399500 LjG1.1_chr1 88661124 88667910 +
2 domain predictions
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LotjaGi1g1v0454200.1
n.a. TATA-box-binding protein; TAIR: AT1G55520.1 TATA binding protein 2; Swiss-Prot: sp|Q42808|TBP_SOYBN TATA-box-binding protein; TrEMBL-Plants: tr|I3SW52|I3SW52_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0454200 LjG1.1_chr1 95524644 95529349 +
2 domain predictions
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LotjaGi1g1v0454200.2
n.a. TATA-box-binding protein; TAIR: AT1G55520.1 TATA binding protein 2; Swiss-Prot: sp|Q42808|TBP_SOYBN TATA-box-binding protein; TrEMBL-Plants: tr|A0A151U2X0|A0A151U2X0_CAJCA TATA-box-binding protein; Found in the gene: LotjaGi1g1v0454200 LjG1.1_chr1 95525239 95528275 +
2 domain predictions
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LotjaGi1g1v0570700.1
n.a. Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|A0A151TG92|A0A151TG92_CAJCA Coatomer subunit gamma; Found in the gene: LotjaGi1g1v0570700 LjG1.1_chr1 110429473 110441676 +
2 domain predictions
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LotjaGi1g1v0570700.2
n.a. Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|A0A0B2S4Z9|A0A0B2S4Z9_GLYSO Coatomer subunit gamma; Found in the gene: LotjaGi1g1v0570700 LjG1.1_chr1 110429820 110435990 +
2 domain predictions
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LotjaGi1g1v0570700.3
n.a. Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|A0A0B2S4Z9|A0A0B2S4Z9_GLYSO Coatomer subunit gamma; Found in the gene: LotjaGi1g1v0570700 LjG1.1_chr1 110429980 110435990 +
2 domain predictions
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LotjaGi1g1v0641100.2
n.a. TATA-box binding family protein; TAIR: AT1G55520.1 TATA binding protein 2; Swiss-Prot: sp|P50158|TBP1_MAIZE TATA-box-binding protein 1; TrEMBL-Plants: tr|A0A1D6KZ57|A0A1D6KZ57_MAIZE Uncharacterized protein; Found in the gene: LotjaGi1g1v0641100 LjG1.1_chr1 119818234 119829277 -
2 domain predictions
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LotjaGi3g1v0094100.1
n.a. TATA-box-binding protein; TAIR: AT1G55520.1 TATA binding protein 2; Swiss-Prot: sp|Q42808|TBP_SOYBN TATA-box-binding protein; TrEMBL-Plants: tr|K7MHA4|K7MHA4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0094100 LjG1.1_chr3 11556554 11562683 -
2 domain predictions
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LotjaGi3g1v0094100.2
n.a. TATA-box-binding protein; TAIR: AT1G55520.1 TATA binding protein 2; Swiss-Prot: sp|Q42808|TBP_SOYBN TATA-box-binding protein; TrEMBL-Plants: tr|K7MHA4|K7MHA4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0094100 LjG1.1_chr3 11557218 11562125 -
2 domain predictions
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LotjaGi3g1v0094100.3
n.a. TATA-box-binding protein; TAIR: AT3G13445.2 TATA binding protein 1; Swiss-Prot: sp|Q42808|TBP_SOYBN TATA-box-binding protein; TrEMBL-Plants: tr|K7MHA4|K7MHA4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0094100 LjG1.1_chr3 11557436 11562125 -
2 domain predictions
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LotjaGi3g1v0172200.1
n.a. AP-2 complex subunit alpha; TAIR: AT5G22770.1 alpha-adaptin; Swiss-Prot: sp|Q8LPL6|AP2A1_ARATH AP-2 complex subunit alpha-1; TrEMBL-Plants: tr|A0A151RV94|A0A151RV94_CAJCA AP-2 complex subunit alpha; Found in the gene: LotjaGi3g1v0172200 LjG1.1_chr3 23691479 23711881 +
2 domain predictions
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LotjaGi3g1v0172200.2
n.a. AP-2 complex subunit alpha; TAIR: AT5G22770.1 alpha-adaptin; Swiss-Prot: sp|Q8LPL6|AP2A1_ARATH AP-2 complex subunit alpha-1; TrEMBL-Plants: tr|A0A151RV94|A0A151RV94_CAJCA AP-2 complex subunit alpha; Found in the gene: LotjaGi3g1v0172200 LjG1.1_chr3 23691898 23710822 +
2 domain predictions
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LotjaGi3g1v0172200.3
n.a. AP-2 complex subunit alpha; TAIR: AT5G22770.1 alpha-adaptin; Swiss-Prot: sp|Q8LPL6|AP2A1_ARATH AP-2 complex subunit alpha-1; TrEMBL-Plants: tr|A0A151RV94|A0A151RV94_CAJCA AP-2 complex subunit alpha; Found in the gene: LotjaGi3g1v0172200 LjG1.1_chr3 23696749 23710822 +
2 domain predictions
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LotjaGi3g1v0507600.1
n.a. Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|I1LQ46|I1LQ46_SOYBN Coatomer subunit gamma; Found in the gene: LotjaGi3g1v0507600 LjG1.1_chr3 92464004 92471542 +
2 domain predictions
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LotjaGi3g1v0507600.2
n.a. Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|A0A0B2R0D6|A0A0B2R0D6_GLYSO Coatomer subunit gamma; Found in the gene: LotjaGi3g1v0507600 LjG1.1_chr3 92464522 92471127 +
2 domain predictions
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LotjaGi3g1v0507600.3
n.a. Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|A0A0B2R0D6|A0A0B2R0D6_GLYSO Coatomer subunit gamma; Found in the gene: LotjaGi3g1v0507600 LjG1.1_chr3 92464653 92471127 +
2 domain predictions
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LotjaGi3g1v0534900.1
n.a. Beta-adaptin-like protein; TAIR: AT4G23460.1 Adaptin family protein; Swiss-Prot: sp|O81742|APBLC_ARATH Beta-adaptin-like protein C; TrEMBL-Plants: tr|I1LPD3|I1LPD3_SOYBN Beta-adaptin-like protein; Found in the gene: LotjaGi3g1v0534900 LjG1.1_chr3 95173930 95182044 +
2 domain predictions
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LotjaGi3g1v0534900.2
n.a. Beta-adaptin-like protein; TAIR: AT4G23460.1 Adaptin family protein; Swiss-Prot: sp|O81742|APBLC_ARATH Beta-adaptin-like protein C; TrEMBL-Plants: tr|I1LPD3|I1LPD3_SOYBN Beta-adaptin-like protein; Found in the gene: LotjaGi3g1v0534900 LjG1.1_chr3 95174166 95181677 +
2 domain predictions
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LotjaGi3g1v0534900.3
n.a. Beta-adaptin-like protein; TAIR: AT4G23460.1 Adaptin family protein; Swiss-Prot: sp|O81742|APBLC_ARATH Beta-adaptin-like protein C; TrEMBL-Plants: tr|I1LPD3|I1LPD3_SOYBN Beta-adaptin-like protein; Found in the gene: LotjaGi3g1v0534900 LjG1.1_chr3 95174166 95181677 +
2 domain predictions
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LotjaGi3g1v0534900.4
n.a. Beta-adaptin-like protein; TAIR: AT4G23460.1 Adaptin family protein; Swiss-Prot: sp|O81742|APBLC_ARATH Beta-adaptin-like protein C; TrEMBL-Plants: tr|A0A151SCZ4|A0A151SCZ4_CAJCA AP-1 complex subunit beta-1; Found in the gene: LotjaGi3g1v0534900 LjG1.1_chr3 95175667 95181677 +
2 domain predictions
 –