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| Field | Value |
|---|---|
| Gene ID | Lj1g3v2570540 |
| Transcript ID | Lj1g3v2570540.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357442883|ref|XP_003591719.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 218 | 218 | 1.00E-118 | – | |
| PANTHER | 1 | 218 | 218 | 1.00E-118 | – | |
| Pfam | 8 | 57 | 50 | 5.80E-19 | ||
| ProSiteProfiles | 9 | 43 | 35 | 12.211 | ||
| TIGRFAM | 11 | 45 | 35 | 2.90E-09 | ||
| ProSiteProfiles | 44 | 78 | 35 | 12.573 | ||
| TIGRFAM | 46 | 79 | 34 | 2.70E-10 | ||
| Gene3D | 47 | 210 | 164 | 3.10E-05 | ||
| ProSiteProfiles | 79 | 113 | 35 | 12.211 | ||
| Pfam | 79 | 127 | 49 | 6.50E-17 | ||
| TIGRFAM | 81 | 115 | 35 | 6.80E-08 | ||
| ProSiteProfiles | 114 | 148 | 35 | 11.783 | ||
| TIGRFAM | 117 | 148 | 32 | 2.20E-06 | ||
| ProSiteProfiles | 149 | 183 | 35 | 13.23 | ||
| Pfam | 150 | 195 | 46 | 1.40E-13 | ||
| TIGRFAM | 152 | 185 | 34 | 3.00E-12 | ||
| ProSiteProfiles | 184 | 218 | 35 | 8.868 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v2570540.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v2570540.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.