Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v2580570.1

Overview

Field Value
Gene ID Lj1g3v2580570
Transcript ID Lj1g3v2580570.1
Lotus japonicus genome version MG20 v3.0
Description Heat shock protein [Medicago truncatula] gi|357448685|ref|XP_003594618.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF53067
3 86 84 1.24E-29 –
PANTHER
PTHR19375:SF227
4 510 507 0 –
PANTHER
PTHR19375
4 510 507 0 –
Pfam
PF00012
5 509 505 3.70E-173
IPR013126
Gene3D
G3DSA:3.30.420.40
5 102 98 1.90E-45 –
PRINTS
PR00301
41 61 21 4.90E-45
IPR013126
SUPERFAMILY
SSF53067
93 282 190 9.58E-62 –
ProSitePatterns
PS00329
98 111 14 –
IPR018181
Gene3D
G3DSA:3.30.420.40
103 131 29 4.50E-35 –
PRINTS
PR00301
104 114 11 4.90E-45
IPR013126
Gene3D
G3DSA:3.90.640.10
132 211 80 2.10E-32 –
Gene3D
G3DSA:3.30.420.40
217 259 43 4.50E-35 –
PRINTS
PR00301
232 248 17 4.90E-45
IPR013126
ProSitePatterns
PS01036
235 249 15 –
IPR018181
PRINTS
PR00301
264 284 21 4.90E-45
IPR013126
Gene3D
G3DSA:2.60.34.10
270 456 187 8.70E-66
IPR029047
SUPERFAMILY
SSF100920
287 442 156 9.16E-48
IPR029047
PRINTS
PR00301
290 309 20 4.90E-45
IPR013126
PRINTS
PR00301
370 386 17 4.90E-45
IPR013126
SUPERFAMILY
SSF100934
437 509 73 4.58E-10
IPR029048

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj1g3v2580570.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2580570.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.