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Lj1g3v3328880.1

Overview

Field Value
Gene ID Lj1g3v3328880
Transcript ID Lj1g3v3328880.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: T-complex protein 1 subunit zeta-like [Glycine max] gi|356569084|ref|XP_003552736.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11353:SF21
1 533 533 4.80E-283
IPR012722
PANTHER
PTHR11353
1 533 533 4.80E-283 –
TIGRFAM
TIGR02347
2 533 532 1.60E-273
IPR012722
Gene3D
G3DSA:1.10.560.10
3 137 135 3.90E-73
IPR027413
CDD
cd03342
6 529 524 0
IPR012722
SUPERFAMILY
SSF48592
11 140 130 3.66E-74 –
Pfam
PF00118
29 528 500 6.50E-164
IPR002423
PRINTS
PR00304
31 47 17 1.10E-22
IPR017998
PRINTS
PR00304
53 71 19 1.10E-22
IPR017998
ProSitePatterns
PS00751
55 71 17 –
IPR002194
PRINTS
PR00304
83 102 20 1.10E-22
IPR017998
SUPERFAMILY
SSF54849
145 210 66 5.19E-24 –
Gene3D
G3DSA:3.30.260.10
147 208 62 2.10E-22
IPR027410
SUPERFAMILY
SSF52029
206 381 176 6.28E-48
IPR027409
Gene3D
G3DSA:3.50.7.10
209 376 168 9.50E-52
IPR027409
SUPERFAMILY
SSF54849
371 407 37 5.19E-24 –
PRINTS
PR00304
376 398 23 1.10E-22
IPR017998
Gene3D
G3DSA:3.30.260.10
377 406 30 2.10E-22
IPR027410
Gene3D
G3DSA:1.10.560.10
407 527 121 3.90E-73
IPR027413
SUPERFAMILY
SSF48592
408 526 119 3.66E-74 –
PRINTS
PR00304
410 422 13 1.10E-22
IPR017998

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0051082
Molecular function Unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj1g3v3328880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3328880.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.