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Lj1g3v3381390.1

Overview

Field Value
Gene ID Lj1g3v3381390
Transcript ID Lj1g3v3381390.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: patellin-3-like [Glycine max] gi|356509557|ref|XP_003523514.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 431 431 – –
PANTHER
PTHR23324:SF55
1 332 332 2.10E-265 –
PANTHER
PTHR23324
1 332 332 2.10E-265 –
SUPERFAMILY
SSF46938
64 135 72 6.80E-20
IPR011074
Gene3D
G3DSA:1.10.8.20
65 120 56 4.00E-16 –
Pfam
PF03765
91 118 28 7.40E-08
IPR011074
SMART
SM01100
94 119 26 2.70E-09
IPR011074
PRINTS
PR00180
97 119 23 1.90E-05
IPR001071
Gene3D
G3DSA:3.40.525.10
121 329 209 4.00E-85
IPR001251
SMART
SM00516
139 310 172 1.20E-53
IPR001251
SUPERFAMILY
SSF52087
139 335 197 5.36E-60
IPR001251
ProSiteProfiles
PS50191
139 313 175 26.723
IPR001251
CDD
cd00170
140 308 169 3.26E-39 –
Pfam
PF00650
142 308 167 1.50E-34
IPR001251
PRINTS
PR00180
266 285 20 1.90E-05
IPR001071
TMHMM
TMhelix
431 453 23 – –
Phobius
TRANSMEMBRANE
432 451 20 – –
Phobius
CYTOPLASMIC_DOMAIN
452 482 31 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 32

Expression data

Expression pattern

Expression pattern of Lj1g3v3381390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3381390.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.