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Lj1g3v3476150.1

Overview

Field Value
Gene ID Lj1g3v3476150
Transcript ID Lj1g3v3476150.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: agamous-like MADS-box protein AGL80-like [Cicer arietinum] gi|502118503|ref|XP_004496299.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF55455
1 81 81 6.54E-19
IPR002100
ProSiteProfiles
PS50066
1 47 47 16.133
IPR002100
SMART
SM00432
1 60 60 2.80E-18
IPR002100
PANTHER
PTHR11945:SF153
2 148 147 3.40E-36 –
PANTHER
PTHR11945
2 148 147 3.40E-36 –
CDD
cd00266
2 74 73 3.20E-21
IPR033897
PRINTS
PR00404
3 23 21 9.20E-09
IPR002100
Pfam
PF00319
11 47 37 9.30E-13
IPR002100
PRINTS
PR00404
23 38 16 9.20E-09
IPR002100

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000981
Molecular function DNA-binding transcription factor activity, RNA polymerase II-specific A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
Subterm of
GO:0000987
Molecular function Proximal promoter sequence-specific DNA binding Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter. The proximal promoter is in cis with and relatively close to the core promoter.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0045944
Biological process Positive regulation of transcription by RNA polymerase II Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
Subterm of
Positively regulates
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v3476150.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3476150.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.