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cd00266

Source: CDD

Description

MADS_SRF_like

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000981
Molecular function DNA-binding transcription factor activity, RNA polymerase II-specific A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
Subterm of
GO:0000987
Molecular function Proximal promoter sequence-specific DNA binding Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter. The proximal promoter is in cis with and relatively close to the core promoter.
Subterm of
GO:0045944
Biological process Positive regulation of transcription by RNA polymerase II Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
Subterm of
Positively regulates

Associated Lotus transcripts 28

Transcript Name Description Predicted domains Domain count
Lj0g3v0256589.1
– PREDICTED: agamous-like MADS-box protein AGL80-like [Cicer arietinum] gi|502129875|ref|XP_004500454.1|
Domains
11
Lj0g3v0271989.1
– PREDICTED: agamous-like MADS-box protein AGL80-like [Cicer arietinum] gi|502129895|ref|XP_004500461.1|
Domains
8
Lj0g3v0294559.1
– PREDICTED: agamous-like MADS-box protein AGL16-like [Cicer arietinum] gi|502093308|ref|XP_004489898.1|
Domains
10
Lj0g3v0294569.1
– PREDICTED: agamous-like MADS-box protein AGL16-like [Cicer arietinum] gi|502093308|ref|XP_004489898.1|
Domains
10
Lj1g3v1913900.1
– Pheres1 [Medicago truncatula] gi|357491487|ref|XP_003616031.1|
Domains
12
Lj1g3v2809220.1
– PREDICTED: agamous-like MADS-box protein AGL80-like [Cicer arietinum] gi|502129872|ref|XP_004500453.1|
Domains
11
Lj1g3v3466130.1
– PREDICTED: agamous-like MADS-box protein AGL80-like [Cicer arietinum] gi|502118503|ref|XP_004496299.1|
Domains
10
Lj1g3v3476150.1
– PREDICTED: agamous-like MADS-box protein AGL80-like [Cicer arietinum] gi|502118503|ref|XP_004496299.1|
Domains
10
Lj4g3v1335440.1
– PREDICTED: agamous-like MADS-box protein AGL61-like [Fragaria vesca subsp]. vesca] gi|470116765|ref|XP_004294548.1|
Domains
15
Lj5g3v2258490.1
– PREDICTED: MADS-box transcription factor PHERES 2-like [Cicer arietinum] gi|502180646|ref|XP_004516685.1|
Domains
10
Lj6g3v0408380.1
– PREDICTED: agamous-like MADS-box protein AGL80-like [Cicer arietinum] gi|502137801|ref|XP_004503191.1|
Domains
14
LotjaGi1g1v0163000.1
– MADS-box transcription factor family protein; TAIR: AT5G55690.1 MADS-box transcription factor family protein; Swiss-Prot: sp|Q9FIM0|AGL82_ARATH Agamous-like MADS-box protein AGL82; TrEMBL-Plants: tr|A0A151RE42|A0A151RE42_CAJCA MADS-box transcription factor PHERES 2; Found in the gene: LotjaGi1g1v0163000
Domains
12
LotjaGi1g1v0163000.2
– MADS-box transcription factor family protein; TAIR: AT5G55690.1 MADS-box transcription factor family protein; Swiss-Prot: sp|Q9FIM0|AGL82_ARATH Agamous-like MADS-box protein AGL82; TrEMBL-Plants: tr|A0A151RE42|A0A151RE42_CAJCA MADS-box transcription factor PHERES 2; Found in the gene: LotjaGi1g1v0163000
Domains
12
LotjaGi1g1v0386900.1
– AGAMOUS-like MADS-box protein; TAIR: AT1G31640.1 AGAMOUS-like 92; Swiss-Prot: sp|Q9C6V4|AGL92_ARATH Agamous-like MADS-box protein AGL92; TrEMBL-Plants: tr|A0A072UXE2|A0A072UXE2_MEDTR MADS-box transcription factor family protein; Found in the gene: LotjaGi1g1v0386900
Domains
14
LotjaGi1g1v0484200.1
– AGAMOUS-like MADS-box protein; TAIR: AT5G48670.1 AGAMOUS-like 80; Swiss-Prot: sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80; TrEMBL-Plants: tr|A0A1J7GZY2|A0A1J7GZY2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0484200
Domains
13
LotjaGi1g1v0583800.1
– MADS-box transcription factor family protein; TAIR: AT3G05860.2 MADS-box transcription factor family protein; Swiss-Prot: sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80; TrEMBL-Plants: tr|G7JY85|G7JY85_MEDTR MADS-box transcription factor family protein; Found in the gene: LotjaGi1g1v0583800
Domains
12
LotjaGi1g1v0584000.1
– MADS-box transcription factor family protein; TAIR: AT3G05860.2 MADS-box transcription factor family protein; Swiss-Prot: sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80; TrEMBL-Plants: tr|G7JY85|G7JY85_MEDTR MADS-box transcription factor family protein; Found in the gene: LotjaGi1g1v0584000
Domains
12
LotjaGi4g1v0092300.1
– AGAMOUS-like MADS-box protein; TAIR: AT5G48670.1 AGAMOUS-like 80; Swiss-Prot: sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80; TrEMBL-Plants: tr|A0A1J7FS39|A0A1J7FS39_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0092300
Domains
13
LotjaGi4g1v0092400.1
– AGAMOUS-like MADS-box protein; TAIR: AT5G48670.1 AGAMOUS-like 80; Swiss-Prot: sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80; TrEMBL-Plants: tr|A0A1J7FS39|A0A1J7FS39_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0092400
Domains
13
LotjaGi4g1v0092500.1
– AGAMOUS-like MADS-box protein; TAIR: AT5G48670.1 AGAMOUS-like 80; Swiss-Prot: sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80; TrEMBL-Plants: tr|A0A1J7FS39|A0A1J7FS39_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0092500
Domains
13
LotjaGi4g1v0092600.1
– AGAMOUS-like MADS-box protein; TAIR: AT5G48670.1 AGAMOUS-like 80; Swiss-Prot: sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80; TrEMBL-Plants: tr|A0A1J7FS39|A0A1J7FS39_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0092600
Domains
13
LotjaGi4g1v0092700.1
– AGAMOUS-like MADS-box protein; TAIR: AT5G48670.1 AGAMOUS-like 80; Swiss-Prot: sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80; TrEMBL-Plants: tr|A0A1J7FS39|A0A1J7FS39_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0092700
Domains
13
LotjaGi4g1v0250100.1
– MADS-box transcription factor family protein; TAIR: AT1G18750.4 AGAMOUS-like 65; Swiss-Prot: sp|Q7X9I0|AGL65_ARATH Agamous-like MADS-box protein AGL65; TrEMBL-Plants: tr|A0A0S3R7D7|A0A0S3R7D7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0250100
Domains
13
LotjaGi4g1v0250100.2
– MADS-box transcription factor family protein; TAIR: AT1G18750.4 AGAMOUS-like 65; Swiss-Prot: sp|Q7X9I0|AGL65_ARATH Agamous-like MADS-box protein AGL65; TrEMBL-Plants: tr|A0A0S3R7D7|A0A0S3R7D7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0250100
Domains
13
LotjaGi4g1v0352000.1
– AGAMOUS-like MADS-box protein; TAIR: AT5G48670.1 AGAMOUS-like 80; Swiss-Prot: sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80; TrEMBL-Plants: tr|G7JY85|G7JY85_MEDTR MADS-box transcription factor family protein; Found in the gene: LotjaGi4g1v0352000
Domains
11
LotjaGi5g1v0163000_LC.1
– AGAMOUS MADS box factor transcription factor; TAIR: AT5G55690.1 MADS-box transcription factor family protein; Swiss-Prot: sp|Q9FIM0|AGL82_ARATH Agamous-like MADS-box protein AGL82; TrEMBL-Plants: tr|A0A1J7I5B9|A0A1J7I5B9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0163000_LC
Domains
12
LotjaGi6g1v0042500.1
– AGAMOUS-like MADS-box protein; TAIR: AT5G48670.1 AGAMOUS-like 80; Swiss-Prot: sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80; TrEMBL-Plants: tr|A0A1J7FS39|A0A1J7FS39_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0042500
Domains
13
LotjaGi6g1v0054200.1
– AGAMOUS-like MADS-box protein; TAIR: AT5G48670.1 AGAMOUS-like 80; Swiss-Prot: sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80; TrEMBL-Plants: tr|V7D1F9|V7D1F9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0054200
Domains
16

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd00266 CDD 1 3.57