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Lj1g3v3477210.1

Overview

Field Value
Gene ID Lj1g3v3477210
Transcript ID Lj1g3v3477210.1
Lotus japonicus genome version MG20 v3.0
Description Male sterility 5 family protein [Medicago truncatula] gi|357505367|ref|XP_003622972.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR36326
8 305 298 1.50E-60 –
PANTHER
PTHR36326:SF1
8 305 298 1.50E-60 –
SUPERFAMILY
SSF48452
55 109 55 4.93E-11
IPR011990
Gene3D
G3DSA:1.25.40.10
56 234 179 2.90E-15
IPR011990
Coils
Coil
118 138 21 – –
SUPERFAMILY
SSF48452
172 234 63 4.93E-11
IPR011990
Pfam
PF13181
172 202 31 0.07
IPR019734

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj1g3v3477210.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3477210.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.