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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3835770 |
| Transcript ID | Lj1g3v3835770.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | F-box family protein [Medicago truncatula] gi|357505507|ref|XP_003623042.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | – | – | |
| SignalP | 1 | 27 | 27 | – | – | |
| Phobius | 1 | 27 | 27 | – | – | |
| Phobius | 11 | 22 | 12 | – | – | |
| PANTHER | 23 | 397 | 375 | 6.80E-76 | – | |
| PANTHER | 23 | 397 | 375 | 6.80E-76 | – | |
| Phobius | 23 | 27 | 5 | – | – | |
| Phobius | 28 | 398 | 371 | – | – | |
| ProSiteProfiles | 35 | 83 | 49 | 11.776 | ||
| SUPERFAMILY | 35 | 91 | 57 | 1.28E-13 | ||
| Gene3D | 36 | 224 | 189 | 5.90E-15 | ||
| Pfam | 38 | 72 | 35 | 4.40E-11 | ||
| SMART | 41 | 81 | 41 | 5.80E-07 | ||
| SUPERFAMILY | 75 | 389 | 315 | 3.57E-07 | – | |
| Gene3D | 276 | 315 | 40 | 5.90E-15 | ||
| Pfam | 322 | 365 | 44 | 1.40E-07 | ||
| SMART | 326 | 398 | 73 | 0.0035 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v3835770.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3835770.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.