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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3930420 |
| Transcript ID | Lj1g3v3930420.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ethylene-responsive transcription factor LEP-like [Cicer arietinum] gi|502107665|ref|XP_004493337.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 136 | 136 | 7.70E-77 | – | |
| MobiDBLite | 1 | 34 | 34 | – | – | |
| PANTHER | 1 | 136 | 136 | 7.70E-77 | – | |
| Phobius | 1 | 239 | 239 | – | – | |
| ProSiteProfiles | 32 | 89 | 58 | 21.14 | ||
| Gene3D | 32 | 88 | 57 | 3.00E-29 | ||
| SMART | 32 | 95 | 64 | 2.70E-34 | ||
| CDD | 32 | 88 | 57 | 2.70E-31 | ||
| SUPERFAMILY | 32 | 89 | 58 | 4.12E-21 | ||
| PRINTS | 33 | 44 | 12 | 1.20E-08 | ||
| Pfam | 33 | 81 | 49 | 3.40E-12 | ||
| PRINTS | 55 | 71 | 17 | 1.20E-08 | ||
| Phobius | 240 | 262 | 23 | – | – | |
| TMHMM | 240 | 262 | 23 | – | – | |
| Phobius | 263 | 267 | 5 | – | – | |
| TMHMM | 267 | 286 | 20 | – | – | |
| Phobius | 268 | 288 | 21 | – | – | |
| Phobius | 289 | 289 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of Lj1g3v3930420.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3930420.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.