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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4059030 |
| Transcript ID | Lj1g3v4059030.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: alpha-L-arabinofuranosidase 1-like [Glycine max] gi|356571858|ref|XP_003554088.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | – | – | |
| SignalP | 1 | 28 | 28 | – | – | |
| PANTHER | 1 | 660 | 660 | 0 | – | |
| SignalP | 1 | 28 | 28 | – | – | |
| Phobius | 1 | 22 | 22 | – | – | |
| PANTHER | 1 | 660 | 660 | 0 | – | |
| SignalP | 1 | 28 | 28 | – | – | |
| Phobius | 6 | 17 | 12 | – | – | |
| Phobius | 18 | 22 | 5 | – | – | |
| Phobius | 23 | 670 | 648 | – | – | |
| SUPERFAMILY | 69 | 227 | 159 | 1.89E-05 | ||
| Gene3D | 70 | 227 | 158 | 9.60E-08 | ||
| Pfam | 144 | 226 | 83 | 9.90E-05 | ||
| SUPERFAMILY | 208 | 539 | 332 | 3.71E-83 | ||
| SMART | 456 | 644 | 189 | 3.10E-69 | ||
| Pfam | 457 | 644 | 188 | 1.70E-33 | ||
| SUPERFAMILY | 522 | 647 | 126 | 1.01E-05 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. | ||
| Biological process | L-arabinose metabolic process | The chemical reactions and pathways involving L-arabinose, the D-enantiomer of arabino-pentose. L-arabinose occurs free, e.g. in the heartwood of many conifers, and in the combined state, in both furanose and pyranose forms, as a constituent of various plant hemicelluloses, bacterial polysaccharides etc. | ||
| Molecular function | Alpha-L-arabinofuranosidase activity | Catalysis of the hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides. |
Expression pattern of Lj1g3v4059030.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4059030.1, powered by CORGI.
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