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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4139580 |
| Transcript ID | Lj1g3v4139580.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable signal peptidase complex subunit 2-like [Cicer arietinum] gi|502097270|ref|XP_004490953.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 184 | 184 | 2.20E-83 | – | |
| Phobius | 1 | 40 | 40 | – | – | |
| Pfam | 17 | 173 | 157 | 1.10E-41 | ||
| Phobius | 41 | 59 | 19 | – | – | |
| TMHMM | 42 | 61 | 20 | – | – | |
| Phobius | 60 | 70 | 11 | – | – | |
| Phobius | 71 | 91 | 21 | – | – | |
| TMHMM | 71 | 90 | 20 | – | – | |
| Phobius | 92 | 96 | 5 | – | – | |
| Phobius | 97 | 115 | 19 | – | – | |
| Phobius | 116 | 184 | 69 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Signal peptidase complex | A protein complex that is located in the endoplasmic reticulum membrane and cleaves the signal sequence from precursor proteins following their transport out of the cytoplasmic space. | ||
| Biological process | Signal peptide processing | The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell. | ||
| Molecular function | Peptidase activity | Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj1g3v4139580.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4139580.1, powered by CORGI.
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