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Field | Value |
---|---|
Gene ID | Lj1g3v4140640 |
Transcript ID | Lj1g3v4140640.1 |
Lotus japonicus genome version | MG20 v3.0 |
Description | PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Glycine max] gi|356504692|ref|XP_003521129.1| |
Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 3 | 3 | – | – | |
Phobius | 1 | 30 | 30 | – | – | |
Phobius | 4 | 12 | 9 | – | – | |
Phobius | 13 | 30 | 18 | – | – | |
Phobius | 31 | 273 | 243 | – | – | |
PANTHER | 73 | 242 | 170 | 1.80E-124 | – | |
PANTHER | 73 | 242 | 170 | 1.80E-124 | – | |
SUPERFAMILY | 95 | 253 | 159 | 4.19E-53 | ||
Gene3D | 95 | 242 | 148 | 7.50E-65 | ||
SMART | 120 | 264 | 145 | 1.60E-24 | ||
Pfam | 122 | 228 | 107 | 7.20E-20 | ||
PRINTS | 124 | 139 | 16 | 6.60E-21 | ||
CDD | 125 | 226 | 102 | 4.82E-16 | – | |
PRINTS | 159 | 172 | 14 | 6.60E-21 | ||
PRINTS | 204 | 218 | 15 | 6.60E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | DNA topoisomerase type II (ATP-hydrolyzing) activity | Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Biological process | DNA topological change | The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. |
Expression pattern of Lj1g3v4140640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4140640.1, powered by CORGI.
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