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Lj1g3v4225540.1

Overview

Field	Value
Gene ID	Lj1g3v4225540
Transcript ID	Lj1g3v4225540.1
Lotus japonicus genome version	MG20 v3.0
Description	Protein C4orf14 homolog, related [Medicago truncatula] gi\|87241448\|gb\|ABD33306.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	71	71	–	–
PANTHER	PTHR11089:SF38 View details on PTHR11089:SF38 Search for proteins/transripts with this domain View external data on PTHR11089:SF38	1	26	26	2.20E-185	–
PANTHER	PTHR11089 View details on PTHR11089 Search for proteins/transripts with this domain View external data on PTHR11089	1	26	26	2.20E-185	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	114	140	27	–	–
PANTHER	PTHR11089 View details on PTHR11089 Search for proteins/transripts with this domain View external data on PTHR11089	138	405	268	2.20E-185	–
PANTHER	PTHR11089:SF38 View details on PTHR11089:SF38 Search for proteins/transripts with this domain View external data on PTHR11089:SF38	138	405	268	2.20E-185	–
CDD	cd01855 View details on cd01855 Search for proteins/transripts with this domain View external data on cd01855	144	356	213	2.28E-49	–
Gene3D	G3DSA:3.40.50.300 View details on G3DSA:3.40.50.300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.300	187	358	172	2.10E-19	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF52540 View details on SSF52540 Search for proteins/transripts with this domain View external data on SSF52540	187	378	192	2.68E-19	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01926 View details on PF01926 Search for proteins/transripts with this domain View external data on PF01926	297	370	74	9.00E-10	IPR006073 Show description in modal box View details on IPR006073 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005525 View details of GO:0005525 AmiGO InterPro QuickGO	Molecular function	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.	Subterm of View details of GO:0032550 View details of GO:0032561 View details of GO:0035639

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj1g3v4225540.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4225540.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.