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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006073
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 101 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 6.493s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0054359.1
n.a. PREDICTED: ribosome biogenesis GTPase A-like [Cicer arietinum] gi|502087202|ref|XP_004488460.1| chr0 17387162 17395550 +
2 domain predictions
1 GO term
Lj0g3v0057829.1
n.a. PREDICTED: GTPase HflX-like [Glycine max] gi|356564314|ref|XP_003550400.1| chr0 18993184 18999209 -
3 domain predictions
1 GO term
Lj0g3v0057889.1
n.a. PREDICTED: GTPase obg-like [Glycine max] gi|356551819|ref|XP_003544271.1| chr0 19047624 19053568 +
3 domain predictions
1 GO term
Lj0g3v0102259.1
n.a. PREDICTED: GTP-binding protein At3g49725, chloroplastic-like [Cicer arietinum] gi|502098523|ref|XP_004491256.1| chr0 43472042 43476999 -
2 domain predictions
1 GO term
Lj0g3v0200439.1
n.a. PREDICTED: GTPase Der-like [Cicer arietinum] gi|502126563|ref|XP_004499354.1| chr0 98865974 98870029 +
2 domain predictions
1 GO term
Lj0g3v0264299.1
n.a. PREDICTED: GTP-binding protein ERG-like [Cicer arietinum] gi|502166492|ref|XP_004513909.1| chr0 137008616 137013565 -
2 domain predictions
1 GO term
Lj0g3v0314309.1
n.a. PREDICTED: DNA ligase 1-like [Cicer arietinum] gi|502129568|ref|XP_004500348.1| chr0 164028802 164035501 +
2 domain predictions
1 GO term
Lj0g3v0314309.2
n.a. PREDICTED: DNA ligase 1-like [Cicer arietinum] gi|502129568|ref|XP_004500348.1| chr0 164028802 164035501 +
2 domain predictions
1 GO term
Lj0g3v0352669.1
n.a. tRNA modification GTPase mnmE [Medicago truncatula] gi|358349532|ref|XP_003638789.1| chr0 185494956 185499204 -
2 domain predictions
1 GO term
Lj0g3v0352669.2
n.a. PREDICTED: tRNA modification GTPase MnmE-like [Cicer arietinum] gi|502130302|ref|XP_004500604.1| chr0 185494956 185499204 -
2 domain predictions
1 GO term
Lj1g3v1219010.1
n.a. PREDICTED: developmentally-regulated GTP-binding protein 1-like [Glycine max] gi|356516297|ref|XP_003526832.1| chr1 14820836 14828158 +
3 domain predictions
1 GO term
Lj1g3v1244800.1
n.a. PREDICTED: guanine nucleotide-binding protein-like 3 homolog [Glycine max] gi|356575138|ref|XP_003555699.1| chr1 15122382 15132991 -
3 domain predictions
1 GO term
Lj1g3v2036760.1
n.a. PREDICTED: GTP-binding protein At2g22870-like [Glycine max] gi|356507873|ref|XP_003522687.1| chr1 24106096 24109452 +
2 domain predictions
1 GO term
Lj1g3v2740230.1
n.a. PREDICTED: GTPase HflX-like [Glycine max] gi|356564314|ref|XP_003550400.1| chr1 31492283 31498419 +
3 domain predictions
1 GO term
Lj1g3v3608420.1
n.a. PREDICTED: nucleolar GTP-binding protein 1-like [Glycine max] gi|356527250|ref|XP_003532225.1| chr1 41572543 41582009 +
2 domain predictions
1 GO term
Lj1g3v3608420.2
n.a. PREDICTED: nucleolar GTP-binding protein 1-like [Glycine max] gi|356527250|ref|XP_003532225.1| chr1 41572761 41582009 +
2 domain predictions
1 GO term
Lj1g3v4225540.1
n.a. Protein C4orf14 homolog, related [Medicago truncatula] gi|87241448|gb|ABD33306.1| chr1 49754389 49756332 -
2 domain predictions
1 GO term
Lj1g3v4433190.1
n.a. GTP-binding family protein [Theobroma cacao] gi|508702876|gb|EOX94772.1| chr1 51661483 51665995 -
3 domain predictions
1 GO term
Lj2g3v1645560.1
n.a. PREDICTED: nucleolar GTP-binding protein 1-like [Glycine max] gi|356538952|ref|XP_003537964.1| chr2 25623276 25626174 -
2 domain predictions
1 GO term
Lj3g3v0115900.1
n.a. PREDICTED: mitochondrial GTPase 1-like [Glycine max] gi|356504771|ref|XP_003521168.1| chr3 824918 827690 +
2 domain predictions
1 GO term
Lj3g3v0115900.2
n.a. PREDICTED: mitochondrial GTPase 1-like [Glycine max] gi|356504771|ref|XP_003521168.1| chr3 824918 827678 +
2 domain predictions
1 GO term
Lj3g3v0394900.1
n.a. PREDICTED: GTP-dependent nucleic acid-binding protein engD [Glycine max] gi|356526427|ref|XP_003531819.1| chr3 3220755 3226862 +
3 domain predictions
1 GO term
Lj3g3v0394900.2
n.a. PREDICTED: GTP-dependent nucleic acid-binding protein engD [Glycine max] gi|356526427|ref|XP_003531819.1| chr3 3220755 3227851 +
3 domain predictions
1 GO term
Lj3g3v0397150.1
n.a. PREDICTED: GTPase obg-like [Glycine max] gi|356495244|ref|XP_003516489.1| chr3 3325432 3327010 -
3 domain predictions
1 GO term
Lj3g3v0397150.2
n.a. PREDICTED: GTPase obg-like [Cicer arietinum] gi|502115632|ref|XP_004495251.1| chr3 3325432 3328953 -
3 domain predictions
1 GO term
Lj3g3v2634540.1
n.a. Developmentally regulated G-protein 1 isoform 1 [Theobroma cacao] gi|508779961|gb|EOY27217.1| chr3 32249702 32255838 -
3 domain predictions
1 GO term
Lj3g3v3237920.1
n.a. PREDICTED: GTPase Der-like [Glycine max] gi|356542027|ref|XP_003539473.1| chr3 39928279 39935857 +
3 domain predictions
1 GO term
Lj3g3v3513500.1
n.a. P-loop containing nucleoside triphosphate hydrolases superfamily protein [Theobroma cacao] gi|508702935|gb|EOX94831.1| chr3 42747434 42748775 +
2 domain predictions
1 GO term
Lj3g3v3640230.1
n.a. PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502146209|ref|XP_004506351.1| chr3 44428975 44436953 +
2 domain predictions
1 GO term
Lj3g3v3640230.2
n.a. PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502146209|ref|XP_004506351.1| chr3 44428975 44434360 +
2 domain predictions
1 GO term
Lj4g3v0037570.1
n.a. PREDICTED: GTPase Der-like [Glycine max] gi|356520141|ref|XP_003528723.1| chr4 362169 366999 +
3 domain predictions
1 GO term
Lj4g3v0049640.1
n.a. PREDICTED: GTPase Der-like [Glycine max] gi|356520141|ref|XP_003528723.1| chr4 397999 402804 +
3 domain predictions
1 GO term
Lj4g3v0451300.1
n.a. PREDICTED: GTP-binding protein At2g22870-like [Cicer arietinum] gi|502142648|ref|XP_004505058.1| chr4 6704490 6706668 -
2 domain predictions
1 GO term
Lj4g3v0451300.2
n.a. PREDICTED: GTP-binding protein At2g22870-like [Cicer arietinum] gi|502142648|ref|XP_004505058.1| chr4 6704490 6706335 -
2 domain predictions
1 GO term
Lj4g3v0975570.1
n.a. PREDICTED: GTPase Era-like [Glycine max] gi|356502167|ref|XP_003519892.1| chr4 14254043 14255751 +
2 domain predictions
1 GO term
Lj4g3v0975570.2
n.a. PREDICTED: GTPase Era-like [Glycine max] gi|356502167|ref|XP_003519892.1| chr4 14254043 14262944 +
2 domain predictions
1 GO term
Lj4g3v1327810.1
n.a. PREDICTED: nucleolar GTP-binding protein 1-like [Glycine max] gi|356538952|ref|XP_003537964.1| chr4 19690984 19693090 -
2 domain predictions
1 GO term
Lj5g3v0144410.1
n.a. PREDICTED: GTPase obg-like [Glycine max] gi|356564323|ref|XP_003550404.1| chr5 1475162 1480442 +
3 domain predictions
1 GO term
Lj5g3v0391500.1
n.a. PREDICTED: nucleolar GTP-binding protein 2-like [Glycine max] gi|356544026|ref|XP_003540457.1| chr5 3692512 3697682 +
3 domain predictions
1 GO term
Lj5g3v0433750.1
n.a. PREDICTED: guanine nucleotide-binding protein-like 3 homolog [Cicer arietinum] gi|502170599|ref|XP_004514866.1| chr5 4348726 4354536 +
3 domain predictions
1 GO term
Lj5g3v0975780.4
n.a. GTP-binding protein engA [Medicago truncatula] gi|357440747|ref|XP_003590651.1| chr5 15136516 15142438 -
2 domain predictions
1 GO term
Lj5g3v0975780.5
n.a. GTP-binding protein engA [Medicago truncatula] gi|357440747|ref|XP_003590651.1| chr5 15136516 15143092 -
2 domain predictions
1 GO term
Lj6g3v0820210.1
n.a. PREDICTED: EH domain-containing protein 1-like [Glycine max] gi|356569732|ref|XP_003553050.1| chr6 8355258 8360261 -
2 domain predictions
1 GO term
Lj6g3v1105060.1
n.a. PREDICTED: ribosome biogenesis GTPase A-like [Cicer arietinum] gi|502087202|ref|XP_004488460.1| chr6 13736992 13745618 -
2 domain predictions
1 GO term
Lj6g3v1641150.1
n.a. PREDICTED: obg-like ATPase 1-like [Glycine max] gi|356555899|ref|XP_003546267.1| chr6 18508777 18516818 -
3 domain predictions
1 GO term
Lj6g3v1641150.2
n.a. PREDICTED: obg-like ATPase 1-like [Glycine max] gi|356555899|ref|XP_003546267.1| chr6 18508777 18516818 -
3 domain predictions
1 GO term
Lj6g3v1931780.1
n.a. PREDICTED: GTPase obg-like isoform 1 [Glycine max] gi|356549083|ref|XP_003542927.1| chr6 21914622 21919659 +
3 domain predictions
1 GO term
LotjaGi1g1v0048900.1
n.a. GTPase obg; TAIR: AT3G49725.1 GTP-binding protein, HflX; Swiss-Prot: sp|Q0WTB4|Y3725_ARATH GTP-binding protein At3g49725, chloroplastic; TrEMBL-Plants: tr|K7KB86|K7KB86_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0048900 LjG1.1_chr1 6755598 6760949 +
3 domain predictions
1 GO term
LotjaGi1g1v0246400.1
n.a. tRNA modification GTPase mnmE; TAIR: AT1G78010.1 tRNA modification GTPase; Swiss-Prot: sp|Q3MBM5|MNME_ANAVT tRNA modification GTPase MnmE; TrEMBL-Plants: tr|G8A389|G8A389_MEDTR tRNA modification GTPase trmE; Found in the gene: LotjaGi1g1v0246400 LjG1.1_chr1 59183875 59188482 -
2 domain predictions
1 GO term
LotjaGi1g1v0246400.2
n.a. tRNA modification GTPase mnmE; TAIR: AT1G78010.1 tRNA modification GTPase; Swiss-Prot: sp|Q3MBM5|MNME_ANAVT tRNA modification GTPase MnmE; TrEMBL-Plants: tr|K7KJB6|K7KJB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246400 LjG1.1_chr1 59184176 59188339 -
2 domain predictions
1 GO term