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Lj1g3v4275530.1

Overview

Field Value
Gene ID Lj1g3v4275530
Transcript ID Lj1g3v4275530.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: zinc finger CCCH domain-containing protein 30-like [Cicer arietinum] gi|502108910|ref|XP_004493518.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR14493:SF45
31 506 476 0 –
PANTHER
PTHR14493
31 506 476 0 –
SMART
SM00248
40 70 31 4000
IPR002110
Gene3D
G3DSA:1.25.40.20
44 188 145 1.40E-17
IPR020683
CDD
cd00204
45 176 132 2.10E-14 –
SUPERFAMILY
SSF48403
45 169 125 1.26E-16
IPR020683
Pfam
PF12796
48 156 109 8.10E-11
IPR020683
ProSiteProfiles
PS50297
87 190 104 16.6
IPR020683
SMART
SM00248
87 117 31 0.019
IPR002110
SMART
SM00248
122 154 33 0.0021
IPR002110
ProSiteProfiles
PS50088
122 157 36 11.541
IPR002110
SMART
SM00356
301 327 27 4.00E-06
IPR000571
Gene3D
G3DSA:4.10.1000.10
305 328 24 4.60E-04
IPR000571
ProSiteProfiles
PS50103
306 328 23 13.582
IPR000571
Pfam
PF00642
306 326 21 6.40E-05
IPR000571
Gene3D
G3DSA:4.10.1000.10
334 364 31 2.60E-04
IPR000571
SMART
SM00356
336 359 24 33
IPR000571
PANTHER
PTHR14493
529 707 179 0 –
PANTHER
PTHR14493:SF45
529 707 179 0 –
MobiDBLite
mobidb-lite
672 701 30 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj1g3v4275530.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4275530.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.