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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4289090 |
| Transcript ID | Lj1g3v4289090.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: exo-poly-alpha-D-galacturonosidase-like [Cicer arietinum] gi|502109009|ref|XP_004493545.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 27 | 27 | – | – | |
| Phobius | 1 | 27 | 27 | – | – | |
| Phobius | 1 | 9 | 9 | – | – | |
| Phobius | 10 | 21 | 12 | – | – | |
| Phobius | 22 | 27 | 6 | – | – | |
| SUPERFAMILY | 24 | 393 | 370 | 6.29E-73 | ||
| Phobius | 28 | 470 | 443 | – | – | |
| PANTHER | 35 | 448 | 414 | 8.80E-231 | – | |
| PANTHER | 35 | 448 | 414 | 8.80E-231 | – | |
| Gene3D | 38 | 391 | 354 | 1.90E-79 | ||
| Pfam | 120 | 389 | 270 | 7.00E-21 | ||
| SMART | 202 | 228 | 27 | 510 | ||
| SMART | 229 | 250 | 22 | 680 | ||
| SMART | 255 | 276 | 22 | 1300 | ||
| SMART | 346 | 371 | 26 | 2000 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of Lj1g3v4289090.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4289090.1, powered by CORGI.
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