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Lj1g3v4371160.1

Overview

Field Value
Gene ID Lj1g3v4371160
Transcript ID Lj1g3v4371160.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: gamma-tubulin complex component 3 homolog isoform X1 [Cicer arietinum] gi|502109270|ref|XP_004493606.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR19302:SF14
34 164 131 2.80E-297 –
PANTHER
PTHR19302
34 164 131 2.80E-297
IPR007259
PANTHER
PTHR19302:SF14
180 782 603 2.80E-297 –
PANTHER
PTHR19302
180 782 603 2.80E-297
IPR007259
Pfam
PF04130
216 736 521 1.50E-113
IPR007259
Coils
Coil
291 311 21 – –
MobiDBLite
mobidb-lite
781 801 21 – –
PANTHER
PTHR19302
808 873 66 2.80E-297
IPR007259
PANTHER
PTHR19302:SF14
808 873 66 2.80E-297 –
Coils
Coil
820 840 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000226
Biological process Microtubule cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
Subterm of
GO:0000922
Cellular component Spindle pole Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.
Subterm of
Part of
GO:0005815
Cellular component Microtubule organizing center An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
Subterm of
Part of
GO:0007020
Biological process Microtubule nucleation The process in which tubulin alpha-beta heterodimers begin aggregation to form an oligomeric tubulin structure (a microtubule seed). Microtubule nucleation is the initiating step in the formation of a microtubule in the absence of any existing microtubules ('de novo' microtubule formation).
Subterm of
Part of
GO:0043015
Molecular function Gamma-tubulin binding Interacting selectively and non-covalently with the microtubule constituent protein gamma-tubulin.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj1g3v4371160.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4371160.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.