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IPR007259

Description

IPR007259 is a Gamma-tubulin complex component protein.

<p>The microtubule organizing centres (MTOCs) of eukaryotic cells are the sites of nucleation of microtubules, and are known as the centrosome in animal cells and the spindle pole body in yeast. Gamma-tubulin, which is 30% identical to alpha and beta tubulins that form microtubules, appears to be a key protein involved in nucleation of microtubules.</p> <p>Gamma tubulin can assemble into complexes of various sizes with members of the GCP family. In budding yeast, the gamma tubulin-containing small complex (gammaTuSC) contains gamma tubulin, GCP2 and GCP3 (also known as Spc97 and Spc98). In Drosophila and vertebrates, gamma tubulin forms much larger assemblies, termed gamma-tubulin ring complexes (gammaTuRCs), with gamma tubulin, GCP2, GCP3, GCP4, GCP5 and GCP6. The purified gammaTuSC and gammaTuRC complexes exhibit a 'lock washer' shape [[cite:PUB00078450]]. However, the purified gammaTuSC has been shown to have a much lower microtubule-nucleating activity than intact gammaTuRC [[cite:PUB00078445]]. Several models have been proposed to explain their assembly and nucleation mechanism [[cite:PUB00078451]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Microtubule cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
Cellular component Spindle pole Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.
Cellular component Microtubule organizing center An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
Biological process Microtubule nucleation The process in which tubulin alpha-beta heterodimers begin aggregation to form an oligomeric tubulin structure (a microtubule seed). Microtubule nucleation is the initiating step in the formation of a microtubule in the absence of any existing microtubules ('de novo' microtubule formation).
Molecular function Gamma-tubulin binding Interacting selectively and non-covalently with the microtubule constituent protein gamma-tubulin.

Associated Lotus transcripts 28

Transcript Name Description Predicted domains Domain count
Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|18412725|ref|NP_565234.1| 3
Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|18412725|ref|NP_565234.1| 3
PREDICTED: gamma-tubulin complex component 2-like [Glycine max] gi|356560679|ref|XP_003548617.1| 5
Gamma-tubulin complex component [Medicago truncatula] gi|358343837|ref|XP_003636002.1| 7
Gamma-tubulin complex component [Medicago truncatula] gi|358343837|ref|XP_003636002.1| 7
Gamma-tubulin complex component [Medicago truncatula] gi|358343837|ref|XP_003636002.1| 4
Gamma-tubulin complex component [Medicago truncatula] gi|358343837|ref|XP_003636002.1| 4
Spc97 / Spc98 family of spindle pole body component isoform 1 [Theobroma cacao] gi|508727515|gb|EOY19412.1| 4
Spc97 / Spc98 family of spindle pole body component isoform 1 [Theobroma cacao] gi|508727515|gb|EOY19412.1| 4
PREDICTED: gamma-tubulin complex component 3 homolog isoform X1 [Cicer arietinum] gi|502109270|ref|XP_004493606.1| 5
PREDICTED: gamma-tubulin complex component 3 homolog isoform X1 [Cicer arietinum] gi|502109270|ref|XP_004493606.1| 6
Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|18412725|ref|NP_565234.1| 3
PREDICTED: gamma-tubulin complex component 4 homolog [Glycine max] gi|356500339|ref|XP_003518990.1| 4
PREDICTED: gamma-tubulin complex component 4 homolog [Glycine max] gi|356535143|ref|XP_003536108.1| 4
PREDICTED: gamma-tubulin complex component 4 homolog [Cicer arietinum] gi|502117784|ref|XP_004495944.1| 4
PREDICTED: gamma-tubulin complex component 4 homolog [Glycine max] gi|356500339|ref|XP_003518990.1| 4
Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|18412725|ref|NP_565234.1| 3
Gamma-tubulin complex component; TAIR: AT5G06680.1 spindle pole body component 98; Swiss-Prot: sp|Q9FG37|GACP3_ARATH Gamma-tubulin complex component 3; TrEMBL-Plants: tr|V7CYH3|V7CYH3_PHAVU Gamma-tubulin complex component; Found in the gene: LotjaGi1g1v0278900 11
Gamma-tubulin complex component; TAIR: AT5G06680.1 spindle pole body component 98; Swiss-Prot: sp|Q9FG37|GACP3_ARATH Gamma-tubulin complex component 3; TrEMBL-Plants: tr|V7CYH3|V7CYH3_PHAVU Gamma-tubulin complex component; Found in the gene: LotjaGi1g1v0278900 11
Gamma-tubulin complex component; TAIR: AT5G17410.1 Spc97 / Spc98 family of spindle pole body (SBP) component; Swiss-Prot: sp|Q9C5H9|GACP2_ARATH Gamma-tubulin complex component 2; TrEMBL-Plants: tr|A0A0R0FN05|A0A0R0FN05_SOYBN Gamma-tubulin complex component; Found in the gene: LotjaGi1g1v0290100 9
Gamma-tubulin complex component; TAIR: AT5G17410.2 Spc97 / Spc98 family of spindle pole body (SBP) component; Swiss-Prot: sp|Q9C5H9|GACP2_ARATH Gamma-tubulin complex component 2; TrEMBL-Plants: tr|A0A0R0FN05|A0A0R0FN05_SOYBN Gamma-tubulin complex component; Found in the gene: LotjaGi1g1v0290100 9
Gamma-tubulin complex component; TAIR: AT5G17410.1 Spc97 / Spc98 family of spindle pole body (SBP) component; Swiss-Prot: sp|Q9C5H9|GACP2_ARATH Gamma-tubulin complex component 2; TrEMBL-Plants: tr|A0A0R0FN05|A0A0R0FN05_SOYBN Gamma-tubulin complex component; Found in the gene: LotjaGi1g1v0290100 9
Gamma-tubulin complex component; TAIR: AT5G17410.2 Spc97 / Spc98 family of spindle pole body (SBP) component; Swiss-Prot: sp|Q9C5H9|GACP2_ARATH Gamma-tubulin complex component 2; TrEMBL-Plants: tr|A0A0R0FN05|A0A0R0FN05_SOYBN Gamma-tubulin complex component; Found in the gene: LotjaGi1g1v0290100 9
Gamma-tubulin complex component; TAIR: AT1G80260.1 Spc97 / Spc98 family of spindle pole body (SBP) component; Swiss-Prot: sp|Q8BKN5|GCP5_MOUSE Gamma-tubulin complex component 5; TrEMBL-Plants: tr|I1K7W7|I1K7W7_SOYBN Gamma-tubulin complex component; Found in the gene: LotjaGi1g1v0351500 9
Gamma-tubulin complex component; TAIR: AT3G43610.1 Spc97 / Spc98 family of spindle pole body (SBP) component; Swiss-Prot: sp|G5E8P0|GCP6_MOUSE Gamma-tubulin complex component 6; TrEMBL-Plants: tr|K7K5M8|K7K5M8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0461500 12
Gamma-tubulin complex component; TAIR: AT3G43610.1 Spc97 / Spc98 family of spindle pole body (SBP) component; Swiss-Prot: sp|G5E8P0|GCP6_MOUSE Gamma-tubulin complex component 6; TrEMBL-Plants: tr|A0A0R0LJU5|A0A0R0LJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0461500 7
Gamma-tubulin complex component; TAIR: AT3G53760.1 GAMMA-TUBULIN COMPLEX PROTEIN 4; Swiss-Prot: sp|Q9SC88|GCP4_MEDTR Gamma-tubulin complex component 4 homolog; TrEMBL-Plants: tr|A0A151U4M2|A0A151U4M2_CAJCA Gamma-tubulin complex component; Found in the gene: LotjaGi5g1v0250000 9
Gamma-tubulin complex component; TAIR: AT3G53760.1 GAMMA-TUBULIN COMPLEX PROTEIN 4; Swiss-Prot: sp|Q9M350|GACP4_ARATH Gamma-tubulin complex component 4; TrEMBL-Plants: tr|A0A151U4M2|A0A151U4M2_CAJCA Gamma-tubulin complex component; Found in the gene: LotjaGi5g1v0250000 7

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
PTHR19302:SF27 PANTHER 1 3.57