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Lj1g3v4549000.1

Overview

Field Value
Gene ID Lj1g3v4549000
Transcript ID Lj1g3v4549000.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor PIF1-like isoform X1 [Cicer arietinum] gi|502110344|ref|XP_004493858.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.25.40.20
6 61 56 2.90E-04
IPR020683
PANTHER
PTHR24177
12 209 198 1.70E-89 –
PANTHER
PTHR24177:SF17
12 209 198 1.70E-89 –
SUPERFAMILY
SSF48403
17 208 192 3.08E-32
IPR020683
CDD
cd00204
18 138 121 8.95E-18 –
ProSiteProfiles
PS50297
49 209 161 26.735
IPR020683
SMART
SM00248
49 78 30 16
IPR002110
Pfam
PF12796
54 139 86 1.10E-13
IPR020683
Gene3D
G3DSA:1.25.40.20
62 127 66 1.60E-17
IPR020683
CDD
cd00204
79 209 131 1.14E-23 –
SMART
SM00248
83 112 30 0.014
IPR002110
ProSiteProfiles
PS50088
83 115 33 10.526
IPR002110
SMART
SM00248
117 147 31 0.17
IPR002110
Gene3D
G3DSA:1.25.40.20
128 205 78 4.60E-13
IPR020683
SMART
SM00248
152 183 32 25
IPR002110
Pfam
PF13637
155 208 54 1.90E-06 –
SMART
SM00248
189 218 30 200
IPR002110

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj1g3v4549000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4549000.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.