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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR24177
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 89 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.031s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0069449.1
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max] gi|356546390|ref|XP_003541609.1| chr0 25102517 25103649 -
1 domain prediction
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Lj0g3v0083199.1
n.a. Ankyrin repeat-containing protein [Medicago truncatula] gi|357484873|ref|XP_003612724.1| chr0 32818739 32819437 -
1 domain prediction
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Lj0g3v0115939.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225425076|ref|XP_002271486.1| chr0 50955835 50957836 +
1 domain prediction
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Lj0g3v0123289.2
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225425076|ref|XP_002271486.1| chr0 55275235 55279595 +
1 domain prediction
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Lj0g3v0123289.3
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356499291|ref|XP_003518475.1| chr0 55276896 55279595 +
1 domain prediction
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Lj0g3v0209959.1
n.a. Nuclear factor NF-kappa-B p105 subunit [Medicago truncatula] gi|357493197|ref|XP_003616887.1| chr0 105432740 105437817 +
1 domain prediction
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Lj0g3v0228259.1
n.a. PREDICTED: ankyrin repeat-containing protein At2g01680-like [Glycine max] gi|356545932|ref|XP_003541387.1| chr0 117992787 117994042 -
1 domain prediction
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Lj0g3v0271569.1
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max] gi|356546390|ref|XP_003541609.1| chr0 140699913 140700870 -
1 domain prediction
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Lj0g3v0309479.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Solanum lycopersicum] gi|460399061|ref|XP_004245062.1| chr0 161572488 161573092 +
1 domain prediction
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Lj0g3v0342399.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225446327|ref|XP_002273773.1| chr0 179502567 179510410 -
1 domain prediction
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Lj0g3v0362609.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356569643|ref|XP_003553008.1| chr0 191246638 191248172 -
1 domain prediction
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Lj1g3v4548980.1
n.a. PREDICTED: ankyrin repeat-containing protein At2g01680-like [Glycine max] gi|356545932|ref|XP_003541387.1| chr1 53635893 53638783 +
1 domain prediction
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Lj1g3v4549000.1
n.a. PREDICTED: transcription factor PIF1-like isoform X1 [Cicer arietinum] gi|502110344|ref|XP_004493858.1| chr1 53640001 53641047 +
1 domain prediction
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Lj1g3v4549010.2
n.a. PREDICTED: transcription factor PIF1-like isoform X1 [Cicer arietinum] gi|502110344|ref|XP_004493858.1| chr1 53640187 53643109 +
1 domain prediction
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Lj1g3v4549020.1
n.a. PREDICTED: transcription factor PIF1-like isoform X1 [Cicer arietinum] gi|502110344|ref|XP_004493858.1| chr1 53641295 53643109 +
1 domain prediction
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Lj1g3v4578470.1
n.a. Ankyrin repeat-containing protein [Medicago truncatula] gi|357510531|ref|XP_003625554.1| chr1 54153241 54156557 +
1 domain prediction
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Lj2g3v2879450.1
n.a. Nuclear factor NF-kappa-B p105 subunit [Medicago truncatula] gi|357493197|ref|XP_003616887.1| chr2 37497297 37500853 +
1 domain prediction
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Lj2g3v2969650.1
n.a. ankyrin repeat family protein [Citrus unshiu] gi|343887311|dbj|BAK61857.1| chr2 38358076 38359208 +
1 domain prediction
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Lj2g3v3007360.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356499291|ref|XP_003518475.1| chr2 38812700 38813307 -
1 domain prediction
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Lj2g3v3007460.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356499291|ref|XP_003518475.1| chr2 38840573 38841417 -
1 domain prediction
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Lj2g3v3007470.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225425076|ref|XP_002271486.1| chr2 38841979 38846530 -
1 domain prediction
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Lj3g3v0273600.1
n.a. Ankyrin repeat-containing protein [Medicago truncatula] gi|357454831|ref|XP_003597696.1| chr3 1629143 1631973 +
1 domain prediction
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Lj3g3v2532270.1
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max] gi|356546390|ref|XP_003541609.1| chr3 31092272 31093273 -
1 domain prediction
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Lj4g3v0300480.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225446327|ref|XP_002273773.1| chr4 3635734 3642228 +
1 domain prediction
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Lj4g3v0300480.2
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225446327|ref|XP_002273773.1| chr4 3642835 3646326 +
1 domain prediction
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Lj4g3v2374870.1
n.a. Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A [Medicago truncatula] gi|357447499|ref|XP_003594025.1| chr4 32759307 32764147 -
1 domain prediction
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Lj5g3v1168520.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225425076|ref|XP_002271486.1| chr5 18543824 18544291 +
1 domain prediction
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Lj5g3v1170930.1
n.a. PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|359473665|ref|XP_003631341.1| chr5 18616748 18629118 +
1 domain prediction
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Lj5g3v2288690.1
n.a. IGN1 [Lotus japonicus] gi|128168562|dbj|BAF48666.1| chr5 33342249 33346004 +
1 domain prediction
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Lj5g3v2288700.1
n.a. IGN1 [Lotus japonicus] gi|128168562|dbj|BAF48666.1| chr5 33342353 33346079 +
1 domain prediction
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Lj6g3v0803350.1
n.a. Ankyrin repeat-containing protein [Medicago truncatula] gi|357494239|ref|XP_003617408.1| chr6 7958344 7961639 -
1 domain prediction
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Lj6g3v0920040.1
n.a. Nuclear factor NF-kappa-B p105 subunit [Medicago truncatula] gi|357493197|ref|XP_003616887.1| chr6 9072940 9078681 -
1 domain prediction
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Lj6g3v1371870.1
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like [Fragaria vesca subsp]. vesca] gi|470110661|ref|XP_004291592.1| chr6 16274397 16279874 +
1 domain prediction
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Lj6g3v1371880.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356532642|ref|XP_003534880.1| chr6 16282599 16286916 +
1 domain prediction
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Lj6g3v1371880.2
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356532642|ref|XP_003534880.1| chr6 16282634 16286916 +
1 domain prediction
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Lj6g3v1372100.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356532642|ref|XP_003534880.1| chr6 16344280 16344859 +
1 domain prediction
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Lj6g3v1382370.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356532642|ref|XP_003534880.1| chr6 16509808 16510538 -
1 domain prediction
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Lj6g3v1382400.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] gi|356532642|ref|XP_003534880.1| chr6 16515685 16517662 -
1 domain prediction
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Lj6g3v1790940.1
n.a. Inversin [Medicago truncatula] gi|357447075|ref|XP_003593813.1| chr6 20075747 20082460 +
1 domain prediction
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Lj6g3v1790940.2
n.a. Inversin [Medicago truncatula] gi|357447075|ref|XP_003593813.1| chr6 20075747 20081556 +
1 domain prediction
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Lj6g3v1916090.1
n.a. Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A [Medicago truncatula] gi|357447499|ref|XP_003594025.1| chr6 21651661 21656478 +
1 domain prediction
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Lj6g3v1968130.1
n.a. Inversin [Medicago truncatula] gi|357447075|ref|XP_003593813.1| chr6 22807598 22811621 -
1 domain prediction
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Lj6g3v1969160.1
n.a. Inversin [Medicago truncatula] gi|357447075|ref|XP_003593813.1| chr6 22820745 22821292 -
1 domain prediction
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Lj6g3v1969170.1
n.a. Inversin [Medicago truncatula] gi|357447075|ref|XP_003593813.1| chr6 22823920 22829320 -
1 domain prediction
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LotjaGi1g1v0032800.1
n.a. Ankyrin repeat-containing protein family; TAIR: AT3G18670.2 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|A0A151THD2|A0A151THD2_CAJCA Ankyrin repeat-containing protein family; Found in the gene: LotjaGi1g1v0032800 LjG1.1_chr1 4189030 4193520 -
1 domain prediction
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LotjaGi1g1v0053100.1
n.a. Ankyrin repeat-containing protein family; TAIR: AT3G18670.1 Ankyrin repeat family protein; Swiss-Prot: sp|A2CIR5|NPR4_ORYSJ Ankyrin repeat-containing protein NPR4; TrEMBL-Plants: tr|A0A151QZ69|A0A151QZ69_CAJCA Ankyrin repeat-containing protein family; Found in the gene: LotjaGi1g1v0053100 LjG1.1_chr1 7475909 7486034 +
1 domain prediction
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LotjaGi1g1v0053100.2
n.a. Ankyrin repeat-containing protein family; TAIR: AT3G18670.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|A0A151QZ69|A0A151QZ69_CAJCA Ankyrin repeat-containing protein family; Found in the gene: LotjaGi1g1v0053100 LjG1.1_chr1 7483661 7486025 +
1 domain prediction
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LotjaGi1g1v0067000.1
n.a. Ankyrin repeat-containing protein; TAIR: AT3G18670.2 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|A0A072UEY7|A0A072UEY7_MEDTR Ankyrin repeat protein; Found in the gene: LotjaGi1g1v0067000 LjG1.1_chr1 9199961 9211370 -
1 domain prediction
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LotjaGi1g1v0696700.1
n.a. Ankyrin repeat-containing protein; TAIR: AT3G09550.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1; TrEMBL-Plants: tr|G7L1N1|G7L1N1_MEDTR Ankyrin repeat plant-like protein; Found in the gene: LotjaGi1g1v0696700 LjG1.1_chr1 126443860 126447214 -
1 domain prediction
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LotjaGi1g1v0700500.1
n.a. Ankyrin repeat-containing protein; TAIR: AT4G10720.2 Ankyrin repeat family protein; Swiss-Prot: sp|Q8GYH5|BAD1_ARATH Ankyrin repeat-containing protein BDA1; TrEMBL-Plants: tr|A2Q5K6|A2Q5K6_MEDTR Ankyrin; Found in the gene: LotjaGi1g1v0700500 LjG1.1_chr1 126852391 126855230 -
1 domain prediction
 –