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Lj1g3v4579390.1

Overview

Field	Value
Gene ID	Lj1g3v4579390
Transcript ID	Lj1g3v4579390.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: syntaxin-71-like [Glycine max] gi\|356537535\|ref\|XP_003537282.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	245	245	–	–
PANTHER	PTHR19957:SF129 View details on PTHR19957:SF129 Search for proteins/transripts with this domain View external data on PTHR19957:SF129	3	265	263	1.70E-135	–
PANTHER	PTHR19957 View details on PTHR19957 Search for proteins/transripts with this domain View external data on PTHR19957	3	265	263	1.70E-135	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	122	143	22	–	–
Gene3D	G3DSA:1.20.5.110 View details on G3DSA:1.20.5.110 Search for proteins/transripts with this domain View external data on G3DSA:1.20.5.110	160	231	72	4.60E-20	–
SUPERFAMILY	SSF58038 View details on SSF58038 Search for proteins/transripts with this domain View external data on SSF58038	163	230	68	5.23E-15	–
SMART	SM00397 View details on SM00397 Search for proteins/transripts with this domain View external data on SM00397	165	232	68	1.60E-05	IPR000727 Show description in modal box View details on IPR000727 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50192 View details on PS50192 Search for proteins/transripts with this domain View external data on PS50192	170	232	63	14.39	IPR000727 Show description in modal box View details on IPR000727 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd15841 View details on cd15841 Search for proteins/transripts with this domain View external data on cd15841	175	231	57	2.23E-15	–
Pfam	PF05739 View details on PF05739 Search for proteins/transripts with this domain View external data on PF05739	207	256	50	1.50E-11	IPR000727 Show description in modal box View details on IPR000727 Search for proteins/transripts with this domain View on EBI InterPro Service
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	246	263	18	–	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	246	263	18	–	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	264	265	2	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj1g3v4579390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4579390.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.