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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4717390 |
| Transcript ID | Lj1g3v4717390.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | RNA-binding protein [Medicago truncatula] gi|357511099|ref|XP_003625838.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 98 | 98 | – | – | |
| Coils | 43 | 85 | 43 | – | – | |
| PANTHER | 61 | 79 | 19 | 1.50E-192 | – | |
| PANTHER | 61 | 79 | 19 | 1.50E-192 | – | |
| SUPERFAMILY | 115 | 283 | 169 | 6.79E-36 | ||
| PANTHER | 115 | 242 | 128 | 1.50E-192 | – | |
| PANTHER | 115 | 242 | 128 | 1.50E-192 | – | |
| Gene3D | 116 | 197 | 82 | 9.80E-23 | ||
| ProSiteProfiles | 118 | 196 | 79 | 17.83 | ||
| SMART | 119 | 192 | 74 | 2.60E-22 | ||
| SMART | 119 | 192 | 74 | 4.10E-04 | ||
| Pfam | 120 | 190 | 71 | 1.00E-17 | ||
| CDD | 120 | 192 | 73 | 1.86E-19 | – | |
| ProSiteProfiles | 198 | 280 | 83 | 12.577 | ||
| SMART | 199 | 276 | 78 | 4.70E-11 | ||
| Pfam | 200 | 267 | 68 | 4.10E-09 | ||
| Gene3D | 201 | 379 | 179 | 3.30E-36 | ||
| SUPERFAMILY | 288 | 380 | 93 | 4.84E-23 | ||
| PANTHER | 291 | 491 | 201 | 1.50E-192 | – | |
| PANTHER | 291 | 491 | 201 | 1.50E-192 | – | |
| ProSiteProfiles | 292 | 370 | 79 | 15.92 | ||
| SMART | 293 | 366 | 74 | 2.80E-18 | ||
| Pfam | 294 | 363 | 70 | 7.00E-17 | ||
| MobiDBLite | 368 | 387 | 20 | – | – | |
| MobiDBLite | 453 | 496 | 44 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of Lj1g3v4717390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4717390.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.