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Lj1g3v4752880.2

Overview

Field Value
Gene ID Lj1g3v4752880
Transcript ID Lj1g3v4752880.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Cicer arietinum] gi|502112202|ref|XP_004494262.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24006:SF520
64 302 239 2.10E-257 –
PANTHER
PTHR24006
64 302 239 2.10E-257 –
SUPERFAMILY
SSF54001
119 305 187 5.49E-109 –
ProSiteProfiles
PS50235
121 720 600 56.14
IPR028889
Pfam
PF00443
121 717 597 1.80E-78
IPR001394
ProSitePatterns
PS00972
122 137 16 –
IPR018200
PANTHER
PTHR24006:SF520
572 720 149 2.10E-257 –
PANTHER
PTHR24006
572 720 149 2.10E-257 –
SUPERFAMILY
SSF54001
572 719 148 5.49E-109 –
CDD
cd02674
573 718 146 1.05E-56 –
ProSitePatterns
PS00973
663 680 18 –
IPR018200

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0016579
Biological process Protein deubiquitination The removal of one or more ubiquitin groups from a protein.
Subterm of
GO:0036459
Molecular function Thiol-dependent ubiquitinyl hydrolase activity Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj1g3v4752880.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4752880.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.