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Lj1g3v4764260.1

Overview

Field Value
Gene ID Lj1g3v4764260
Transcript ID Lj1g3v4764260.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: CUGBP Elav-like family member 4-like isoform X2 [Cicer arietinum] gi|502112389|ref|XP_004494315.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 23 23 – –
PANTHER
PTHR24012
2 248 247 2.90E-200 –
PANTHER
PTHR24012:SF414
2 248 247 2.90E-200 –
Gene3D
G3DSA:3.30.70.330
6 105 100 1.70E-20
IPR012677
SUPERFAMILY
SSF54928
16 107 92 1.03E-19
IPR012677
PRINTS
PR00961
24 39 16 1.10E-07
IPR002343
ProSiteProfiles
PS50102
24 105 82 14.129
IPR000504
CDD
cd12361
25 101 77 1.39E-37 –
SMART
SM00360
25 101 77 6.00E-18
IPR000504
Pfam
PF00076
26 90 65 8.00E-15
IPR000504
Gene3D
G3DSA:3.30.70.330
111 203 93 1.50E-19
IPR012677
SUPERFAMILY
SSF54928
112 202 91 7.47E-43
IPR012677
ProSiteProfiles
PS50102
112 192 81 15.579
IPR000504
CDD
cd12361
113 188 76 3.28E-34 –
SMART
SM00360
113 188 76 1.70E-16
IPR000504
Pfam
PF00076
114 177 64 6.50E-16
IPR000504
PRINTS
PR00961
117 132 16 1.10E-07
IPR002343
PRINTS
PR00961
132 144 13 1.10E-07
IPR002343
PRINTS
PR00961
173 190 18 1.10E-07
IPR002343
MobiDBLite
mobidb-lite
194 217 24 – –
PANTHER
PTHR24012
285 301 17 2.90E-200 –
PANTHER
PTHR24012:SF414
285 301 17 2.90E-200 –
MobiDBLite
mobidb-lite
312 354 43 – –
Gene3D
G3DSA:3.30.70.330
340 438 99 4.30E-27
IPR012677
PANTHER
PTHR24012:SF414
351 437 87 2.90E-200 –
PANTHER
PTHR24012
351 437 87 2.90E-200 –
SUPERFAMILY
SSF54928
352 435 84 7.47E-43
IPR012677
ProSiteProfiles
PS50102
355 433 79 17.541
IPR000504
SMART
SM00360
356 429 74 6.80E-25
IPR000504
CDD
cd12362
357 429 73 3.09E-45 –
Pfam
PF00076
357 427 71 2.10E-18
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:1990904
Cellular component Ribonucleoprotein complex A macromolecular complex containing both protein and RNA molecules.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj1g3v4764260.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4764260.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.