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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4831740 |
| Transcript ID | Lj1g3v4831740.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: polygalacturonase At1g48100-like [Glycine max] gi|356571013|ref|XP_003553676.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 329 | 329 | 2.30E-258 | – | |
| PANTHER | 1 | 329 | 329 | 2.30E-258 | – | |
| SUPERFAMILY | 3 | 320 | 318 | 6.29E-102 | ||
| Gene3D | 3 | 301 | 299 | 4.80E-104 | ||
| Pfam | 16 | 282 | 267 | 2.70E-82 | ||
| SMART | 73 | 95 | 23 | 4200 | ||
| SMART | 96 | 122 | 27 | 850 | ||
| SMART | 123 | 144 | 22 | 96 | ||
| SMART | 146 | 166 | 21 | 4500 | ||
| ProSitePatterns | 153 | 166 | 14 | – | ||
| SMART | 176 | 197 | 22 | 15 | ||
| SMART | 205 | 226 | 22 | 1200 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of Lj1g3v4831740.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4831740.1, powered by CORGI.
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