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Lj1g3v4921080.1

Overview

Field Value
Gene ID Lj1g3v4921080
Transcript ID Lj1g3v4921080.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356576787|ref|XP_003556511.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 20 20 – –
MobiDBLite
mobidb-lite
31 73 43 – –
PANTHER
PTHR10593:SF31
40 484 445 4.60E-194 –
PANTHER
PTHR10593
40 484 445 4.60E-194 –
SUPERFAMILY
SSF57667
88 111 24 1.11E-07 –
Gene3D
G3DSA:3.30.160.60
88 111 24 1.30E-05
IPR013087
SMART
SM00355
89 111 23 0.022
IPR015880
ProSiteProfiles
PS50157
89 111 23 10.845
IPR007087
Pfam
PF12171
89 111 23 5.30E-05
IPR022755
ProSitePatterns
PS00028
91 111 21 –
IPR007087
SMART
SM00355
130 160 31 89
IPR015880
Gene3D
G3DSA:3.30.160.60
153 186 34 2.00E-04
IPR013087
SUPERFAMILY
SSF57667
160 185 26 1.11E-07 –
SMART
SM00355
165 185 21 130
IPR015880
MobiDBLite
mobidb-lite
403 432 30 – –
MobiDBLite
mobidb-lite
459 493 35 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj1g3v4921080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4921080.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.