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Lj1g3v4941820.1

Overview

Field Value
Gene ID Lj1g3v4941820
Transcript ID Lj1g3v4941820.1
Lotus japonicus genome version MG20 v3.0
Description Heavy metal-associated domain containing protein expressed [Medicago truncatula] gi|357441611|ref|XP_003591083.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22814:SF134
1 85 85 1.10E-61 –
PANTHER
PTHR22814
1 85 85 1.10E-61 –
Gene3D
G3DSA:3.30.70.100
13 77 65 2.60E-18 –
Pfam
PF00403
22 73 52 1.20E-10
IPR006121
SUPERFAMILY
SSF55008
22 78 57 3.40E-14
IPR006121
ProSiteProfiles
PS50846
23 76 54 12.22
IPR006121
CDD
cd00371
23 75 53 4.19E-13
IPR006121
PANTHER
PTHR22814
170 186 17 1.10E-61 –
PANTHER
PTHR22814:SF134
170 186 17 1.10E-61 –
PANTHER
PTHR22814
246 296 51 1.10E-61 –
PANTHER
PTHR22814:SF134
246 296 51 1.10E-61 –
MobiDBLite
mobidb-lite
278 388 111 – –
PANTHER
PTHR22814:SF134
383 484 102 1.10E-61 –
PANTHER
PTHR22814
383 484 102 1.10E-61 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0030001
Biological process Metal ion transport The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj1g3v4941820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4941820.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.