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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4955120 |
| Transcript ID | Lj1g3v4955120.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Protein FAM38B [Medicago truncatula] gi|357512079|ref|XP_003626328.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 2057 | 2057 | 0 | – | |
| PANTHER | 1 | 2057 | 2057 | 0 | ||
| Phobius | 1 | 11 | 11 | – | – | |
| TMHMM | 7 | 29 | 23 | – | – | |
| Phobius | 12 | 36 | 25 | – | – | |
| Phobius | 37 | 79 | 43 | – | – | |
| Phobius | 80 | 109 | 30 | – | – | |
| TMHMM | 80 | 109 | 30 | – | – | |
| Phobius | 110 | 257 | 148 | – | – | |
| TMHMM | 174 | 196 | 23 | – | – | |
| Phobius | 258 | 286 | 29 | – | – | |
| TMHMM | 258 | 287 | 30 | – | – | |
| Phobius | 287 | 306 | 20 | – | – | |
| TMHMM | 307 | 329 | 23 | – | – | |
| Phobius | 307 | 329 | 23 | – | – | |
| Phobius | 330 | 348 | 19 | – | – | |
| TMHMM | 344 | 366 | 23 | – | – | |
| Phobius | 349 | 366 | 18 | – | – | |
| Phobius | 367 | 400 | 34 | – | – | |
| Phobius | 401 | 425 | 25 | – | – | |
| TMHMM | 401 | 423 | 23 | – | – | |
| Phobius | 426 | 436 | 11 | – | – | |
| Phobius | 437 | 456 | 20 | – | – | |
| TMHMM | 438 | 460 | 23 | – | – | |
| Phobius | 457 | 648 | 192 | – | – | |
| Phobius | 649 | 673 | 25 | – | – | |
| TMHMM | 649 | 671 | 23 | – | – | |
| Phobius | 674 | 684 | 11 | – | – | |
| Phobius | 685 | 704 | 20 | – | – | |
| TMHMM | 686 | 705 | 20 | – | – | |
| Phobius | 705 | 809 | 105 | – | – | |
| TMHMM | 808 | 830 | 23 | – | – | |
| Phobius | 810 | 828 | 19 | – | – | |
| Phobius | 829 | 833 | 5 | – | – | |
| Phobius | 834 | 851 | 18 | – | – | |
| TMHMM | 834 | 851 | 18 | – | – | |
| Phobius | 852 | 862 | 11 | – | – | |
| Phobius | 863 | 880 | 18 | – | – | |
| TMHMM | 864 | 883 | 20 | – | – | |
| Phobius | 881 | 907 | 27 | – | – | |
| Phobius | 908 | 927 | 20 | – | – | |
| Phobius | 928 | 1205 | 278 | – | – | |
| Coils | 986 | 1006 | 21 | – | – | |
| Phobius | 1206 | 1232 | 27 | – | – | |
| TMHMM | 1212 | 1234 | 23 | – | – | |
| Phobius | 1233 | 1243 | 11 | – | – | |
| Phobius | 1244 | 1264 | 21 | – | – | |
| TMHMM | 1246 | 1268 | 23 | – | – | |
| Phobius | 1265 | 1515 | 251 | – | – | |
| TMHMM | 1301 | 1323 | 23 | – | – | |
| Phobius | 1516 | 1539 | 24 | – | – | |
| TMHMM | 1517 | 1539 | 23 | – | – | |
| Phobius | 1540 | 1558 | 19 | – | – | |
| TMHMM | 1559 | 1581 | 23 | – | – | |
| Phobius | 1559 | 1579 | 21 | – | – | |
| Phobius | 1580 | 1585 | 6 | – | – | |
| TMHMM | 1586 | 1605 | 20 | – | – | |
| Phobius | 1586 | 1605 | 20 | – | – | |
| Phobius | 1606 | 1616 | 11 | – | – | |
| Phobius | 1617 | 1639 | 23 | – | – | |
| TMHMM | 1618 | 1640 | 23 | – | – | |
| Phobius | 1640 | 1729 | 90 | – | – | |
| Pfam | 1669 | 2055 | 387 | 2.20E-109 | ||
| Phobius | 1730 | 1751 | 22 | – | – | |
| TMHMM | 1730 | 1752 | 23 | – | – | |
| Phobius | 1752 | 1974 | 223 | – | – | |
| Phobius | 1975 | 1992 | 18 | – | – | |
| TMHMM | 1975 | 1992 | 18 | – | – | |
| Phobius | 1993 | 2057 | 65 | – | – | |
| Coils | 2053 | 2057 | 5 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Mechanosensitive ion channel activity | Enables the transmembrane transfer of an ion by a channel that opens in response to a mechanical stress. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj1g3v4955120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4955120.1, powered by CORGI.
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