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Lj1g3v4955500.1

Overview

Field	Value
Gene ID	Lj1g3v4955500
Transcript ID	Lj1g3v4955500.1
Related isoforms 1	Lj1g3v4955500.2
Lotus japonicus genome version	MG20 v3.0
Description	GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] gi\|15228792\|ref\|NP_188895.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR13256 View details on PTHR13256 Search for proteins/transripts with this domain View external data on PTHR13256	4	173	170	7.70E-108	–
PANTHER	PTHR13256:SF35 View details on PTHR13256:SF35 Search for proteins/transripts with this domain View external data on PTHR13256:SF35	4	173	170	7.70E-108	–
Gene3D	G3DSA:3.40.630.30 View details on G3DSA:3.40.630.30 Search for proteins/transripts with this domain View external data on G3DSA:3.40.630.30	7	168	162	1.60E-40	IPR016181 Show description in modal box View details on IPR016181 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF55729 View details on SSF55729 Search for proteins/transripts with this domain View external data on SSF55729	7	168	162	2.05E-36	IPR016181 Show description in modal box View details on IPR016181 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF13302 View details on PF13302 Search for proteins/transripts with this domain View external data on PF13302	8	143	136	4.40E-24	IPR000182 Show description in modal box View details on IPR000182 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51186 View details on PS51186 Search for proteins/transripts with this domain View external data on PS51186	9	169	161	13.627	IPR000182 Show description in modal box View details on IPR000182 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008080 View details of GO:0008080 AmiGO InterPro QuickGO	Molecular function	N-acetyltransferase activity	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.	Subterm of View details of GO:0016407 View details of GO:0016410

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj1g3v4955500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4955500.1, powered by CORGI.

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