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Lj1g3v4997260.2

Overview

Field	Value
Gene ID	Lj1g3v4997260
Transcript ID	Lj1g3v4997260.2
Related isoforms 1	Lj1g3v4997260.1
Lotus japonicus genome version	MG20 v3.0
Description	Mutator-like transposase isoform 1 [Theobroma cacao] gi\|508719110\|gb\|EOY11007.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31973:SF16 View details on PTHR31973:SF16 Search for proteins/transripts with this domain View external data on PTHR31973:SF16	35	243	209	0	–
PANTHER	PTHR31973 View details on PTHR31973 Search for proteins/transripts with this domain View external data on PTHR31973	35	243	209	0	–
Pfam	PF03108 View details on PF03108 Search for proteins/transripts with this domain View external data on PF03108	179	243	65	6.30E-20	IPR004332 Show description in modal box View details on IPR004332 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03108 View details on PF03108 Search for proteins/transripts with this domain View external data on PF03108	302	334	33	4.00E-08	IPR004332 Show description in modal box View details on IPR004332 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR31973:SF16 View details on PTHR31973:SF16 Search for proteins/transripts with this domain View external data on PTHR31973:SF16	335	842	508	0	–
PANTHER	PTHR31973 View details on PTHR31973 Search for proteins/transripts with this domain View external data on PTHR31973	335	842	508	0	–
Pfam	PF10551 View details on PF10551 Search for proteins/transripts with this domain View external data on PF10551	467	561	95	1.00E-19	IPR018289 Show description in modal box View details on IPR018289 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04434 View details on PF04434 Search for proteins/transripts with this domain View external data on PF04434	695	745	51	5.00E-07	IPR007527 Show description in modal box View details on IPR007527 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50966 View details on PS50966 Search for proteins/transripts with this domain View external data on PS50966	705	746	42	9.211	IPR007527 Show description in modal box View details on IPR007527 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00575 View details on SM00575 Search for proteins/transripts with this domain View external data on SM00575	721	748	28	6.40E-09	IPR006564 Show description in modal box View details on IPR006564 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	790	819	30	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008270 View details of GO:0008270 AmiGO InterPro QuickGO	Molecular function	Zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.	Subterm of View details of GO:0046914

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj1g3v4997260.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4997260.2, powered by CORGI.

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