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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004332
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 38 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.892s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v4997260.1
n.a. Mutator-like transposase isoform 1 [Theobroma cacao] gi|508719110|gb|EOY11007.1| chr1 60710939 60714686 -
2 domain predictions
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Lj1g3v4997260.2
n.a. Mutator-like transposase isoform 1 [Theobroma cacao] gi|508719110|gb|EOY11007.1| chr1 60710939 60714686 -
2 domain predictions
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Lj4g3v0669470.1
n.a. AT3g06940/F17A9_9 [Arabidopsis thaliana] gi|18087533|gb|AAL58900.1|AF462806_1 chr4 11115372 11121718 +
2 domain predictions
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Lj4g3v2249010.1
n.a. MuDR family transposase isoform 1 [Theobroma cacao] gi|508715027|gb|EOY06924.1| chr4 30958394 30963343 +
2 domain predictions
 –
Lj5g3v1361530.1
n.a. Mutator-like transposase isoform 1 [Theobroma cacao] gi|508719110|gb|EOY11007.1| chr5 20805932 20810382 +
2 domain predictions
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LotjaGi1g1v0034800_LC.1
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|O14123|NAH2_SCHPO Probable Na(+)/H(+) antiporter C3A11.09; TrEMBL-Plants: tr|A0A1B5Z7A3|A0A1B5Z7A3_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0034800_LC LjG1.1_chr1 4618282 4618710 +
2 domain predictions
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LotjaGi1g1v0104600_LC.1
n.a. Transposon protein, putative, mutator sub-class; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1; TrEMBL-Plants: tr|A0A1B5Z7A3|A0A1B5Z7A3_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0104600_LC LjG1.1_chr1 16118527 16125390 -
2 domain predictions
 –
LotjaGi1g1v0163100_LC.1
n.a. Mutator-like transposase-like protein; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|Q97KM2|AROA_CLOAB 3-phosphoshikimate 1-carboxyvinyltransferase; TrEMBL-Plants: tr|A0A1B5Z7A3|A0A1B5Z7A3_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0163100_LC LjG1.1_chr1 30657832 30660900 -
2 domain predictions
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LotjaGi1g1v0182500.1
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|Q9JKS6|PCLO_RAT Protein piccolo; TrEMBL-Plants: tr|A0A0B2SI26|A0A0B2SI26_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0182500 LjG1.1_chr1 35595957 35600389 +
2 domain predictions
 –
LotjaGi1g1v0252400_LC.1
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240; TrEMBL-Plants: tr|A0A0B2RY96|A0A0B2RY96_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0252400_LC LjG1.1_chr1 60573586 60575264 -
2 domain predictions
 –
LotjaGi1g1v0604200_LC.1
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|O88799|ZAN_MOUSE Zonadhesin; TrEMBL-Plants: tr|A0A1B5Z7A3|A0A1B5Z7A3_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0604200_LC LjG1.1_chr1 114892699 114896172 +
2 domain predictions
 –
LotjaGi1g1v0621300_LC.1
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|O88799|ZAN_MOUSE Zonadhesin; TrEMBL-Plants: tr|A0A1B5Z7A3|A0A1B5Z7A3_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0621300_LC LjG1.1_chr1 116871590 116896558 +
2 domain predictions
 –
LotjaGi1g1v0666100_LC.1
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT1G64260.1 MuDR family transposase; Swiss-Prot: sp|P13475|3F_DICDI Protein 3F; TrEMBL-Plants: tr|A0A151RDE6|A0A151RDE6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0666100_LC LjG1.1_chr1 122806985 122818009 -
2 domain predictions
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LotjaGi1g1v0706000_LC.2
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|O23140|AP2M_ARATH AP-2 complex subunit mu; TrEMBL-Plants: tr|A0A151SH56|A0A151SH56_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0706000_LC LjG1.1_chr1 127455225 127456892 -
2 domain predictions
 –
LotjaGi1g1v0782900.1
n.a. Mutator-like transposase; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A151U5A4|A0A151U5A4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0782900 LjG1.1_chr1 135600911 135604688 -
2 domain predictions
 –
LotjaGi1g1v0782900.2
n.a. Mutator-like transposase; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A151U5A4|A0A151U5A4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0782900 LjG1.1_chr1 135601402 135603678 -
2 domain predictions
 –
LotjaGi4g1v0043800_LC.1
n.a. Mutator-like transposase; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|Q5HZA3|ZCH12_RAT Zinc finger CCHC domain-containing protein 12; TrEMBL-Plants: tr|K7L2J4|K7L2J4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0043800_LC LjG1.1_chr4 5177154 5180710 +
2 domain predictions
 –
LotjaGi4g1v0043800_LC.2
n.a. Mutator-like transposase; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|Q5HZA3|ZCH12_RAT Zinc finger CCHC domain-containing protein 12; TrEMBL-Plants: tr|K7L2J4|K7L2J4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0043800_LC LjG1.1_chr4 5178567 5180318 +
2 domain predictions
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LotjaGi4g1v0314000_LC.1
n.a. Mutator-like transposase-like protein; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6; TrEMBL-Plants: tr|A0A151SSI3|A0A151SSI3_CAJCA Protein FAR1-RELATED SEQUENCE 4; Found in the gene: LotjaGi4g1v0314000_LC LjG1.1_chr4 69065925 69071296 -
2 domain predictions
 –
LotjaGi4g1v0314000_LC.4
n.a. Mutator-like transposase-like protein; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6; TrEMBL-Plants: tr|A0A151SSI3|A0A151SSI3_CAJCA Protein FAR1-RELATED SEQUENCE 4; Found in the gene: LotjaGi4g1v0314000_LC LjG1.1_chr4 69067817 69070579 -
2 domain predictions
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LotjaGi5g1v0090800_LC.1
n.a. Mutator-like transposase; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|M5X0G1|M5X0G1_PRUPE Uncharacterized protein; Found in the gene: LotjaGi5g1v0090800_LC LjG1.1_chr5 15803047 15808692 +
2 domain predictions
 –
LotjaGi5g1v0107500_LC.1
n.a. Mutator-like transposase-like protein; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|O13834|PTR1_SCHPO E3 ubiquitin-protein ligase ptr1; TrEMBL-Plants: tr|I1L2L0|I1L2L0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0107500_LC LjG1.1_chr5 20453511 20455367 +
2 domain predictions
 –
LotjaGi5g1v0177200.1
n.a. Mutator-like transposase; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1; TrEMBL-Plants: tr|K7N523|K7N523_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0177200 LjG1.1_chr5 45126794 45130147 -
2 domain predictions
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LotjaGi5g1v0177200.2
n.a. Mutator-like transposase; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1; TrEMBL-Plants: tr|K7N523|K7N523_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0177200 LjG1.1_chr5 45126854 45130135 -
2 domain predictions
 –
LotjaGi5g1v0211300.1
n.a. Mutator-like transposase; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|Q58842|FAEHP_METJA Bifunctional enzyme Fae/Hps; TrEMBL-Plants: tr|A0A151U5A4|A0A151U5A4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0211300 LjG1.1_chr5 51580193 51584559 +
2 domain predictions
 –
LotjaGi5g1v0211300.2
n.a. Mutator-like transposase; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|Q58842|FAEHP_METJA Bifunctional enzyme Fae/Hps; TrEMBL-Plants: tr|A0A151U5A4|A0A151U5A4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0211300 LjG1.1_chr5 51581925 51584228 +
2 domain predictions
 –
LotjaGi5g1v0233600_LC.1
n.a. Mutator-like transposase-like protein; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|Q9SZL7|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9; TrEMBL-Plants: tr|K7N2H4|K7N2H4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0233600_LC LjG1.1_chr5 54084174 54089036 -
2 domain predictions
 –
LotjaGi5g1v0233600_LC.2
n.a. Mutator-like transposase-like protein; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|Q9SZL7|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9; TrEMBL-Plants: tr|K7N2H4|K7N2H4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0233600_LC LjG1.1_chr5 54085470 54087830 -
2 domain predictions
 –
LotjaGi5g1v0233600_LC.3
n.a. Mutator-like transposase-like protein; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|Q9SZL7|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9; TrEMBL-Plants: tr|K7N2H4|K7N2H4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0233600_LC LjG1.1_chr5 54085481 54087397 -
2 domain predictions
 –
LotjaGi5g1v0233600_LC.4
n.a. Mutator-like transposase-like protein; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|Q9SZL7|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9; TrEMBL-Plants: tr|K7N2H4|K7N2H4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0233600_LC LjG1.1_chr5 54085481 54087830 -
2 domain predictions
 –
LotjaGi5g1v0233600_LC.5
n.a. Mutator-like transposase-like protein; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|Q9SZL7|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9; TrEMBL-Plants: tr|K7N2H4|K7N2H4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0233600_LC LjG1.1_chr5 54085481 54087830 -
2 domain predictions
 –
LotjaGi5g1v0245600_LC.1
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|Q55EQ3|Y9086_DICDI Uncharacterized abhydrolase domain-containing protein DDB_G0269086; TrEMBL-Plants: tr|A0A1B5Z7A3|A0A1B5Z7A3_TRISU Uncharacterized protein; Found in the gene: LotjaGi5g1v0245600_LC LjG1.1_chr5 55386459 55389160 +
2 domain predictions
 –
LotjaGi6g1v0036300_LC.1
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|Q08964|YP216_YEAST Putative ISWI chromatin-remodeling complex subunit YPL216W; TrEMBL-Plants: tr|A0A1B5Z7A3|A0A1B5Z7A3_TRISU Uncharacterized protein; Found in the gene: LotjaGi6g1v0036300_LC LjG1.1_chr6 7241526 7243475 +
2 domain predictions
 –
LotjaGi6g1v0094800_LC.1
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6; TrEMBL-Plants: tr|A0A0B2SI26|A0A0B2SI26_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0094800_LC LjG1.1_chr6 20476264 20480448 +
2 domain predictions
 –
LotjaGi6g1v0094800_LC.2
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6; TrEMBL-Plants: tr|A0A0B2SI26|A0A0B2SI26_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0094800_LC LjG1.1_chr6 20476444 20480549 +
2 domain predictions
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LotjaGi6g1v0114000.1
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|B1XI09|IF2_SYNP2 Translation initiation factor IF-2; TrEMBL-Plants: tr|A0A1B5Z7A3|A0A1B5Z7A3_TRISU Uncharacterized protein; Found in the gene: LotjaGi6g1v0114000 LjG1.1_chr6 27300142 27302551 -
2 domain predictions
 –
LotjaGi6g1v0158300_LC.1
n.a. Mutator-like transposase; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240; TrEMBL-Plants: tr|A0A0B2RY96|A0A0B2RY96_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0158300_LC LjG1.1_chr6 43934786 43949540 -
2 domain predictions
 –
LotjaGi6g1v0293800_LC.1
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT1G64260.1 MuDR family transposase; Swiss-Prot: sp|Q96MS0|ROBO3_HUMAN Roundabout homolog 3; TrEMBL-Plants: tr|A0A151RZM2|A0A151RZM2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0293800_LC LjG1.1_chr6 61172685 61175110 -
2 domain predictions
 –