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Lj1g3v5060520.1

Overview

Field Value
Gene ID Lj1g3v5060520
Transcript ID Lj1g3v5060520.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine max] gi|356573261|ref|XP_003554781.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 91 91 – –
PANTHER
PTHR24012
26 46 21 9.00E-216 –
PANTHER
PTHR24012:SF479
26 46 21 9.00E-216 –
PANTHER
PTHR24012
106 233 128 9.00E-216 –
SUPERFAMILY
SSF54928
106 273 168 4.19E-39
IPR012677
PANTHER
PTHR24012:SF479
106 233 128 9.00E-216 –
ProSiteProfiles
PS50102
109 187 79 19.894
IPR000504
SMART
SM00361
110 183 74 1.10E-05
IPR003954
SMART
SM00360
110 183 74 9.90E-25
IPR000504
CDD
cd00590
111 183 73 1.09E-22 –
Pfam
PF00076
111 181 71 1.90E-22
IPR000504
Gene3D
G3DSA:3.30.70.330
112 268 157 1.10E-37
IPR012677
ProSiteProfiles
PS50102
189 271 83 12.322
IPR000504
SMART
SM00360
190 267 78 4.60E-11
IPR000504
Pfam
PF00076
191 257 67 5.90E-09
IPR000504
Gene3D
G3DSA:3.30.70.330
269 367 99 6.20E-24
IPR012677
SUPERFAMILY
SSF54928
276 388 113 1.88E-23
IPR012677
PANTHER
PTHR24012:SF479
283 468 186 9.00E-216 –
CDD
cd12251
283 361 79 3.31E-31 –
PANTHER
PTHR24012
283 468 186 9.00E-216 –
ProSiteProfiles
PS50102
284 361 78 16.295
IPR000504
SMART
SM00360
285 357 73 1.40E-19
IPR000504
Pfam
PF00076
286 354 69 2.50E-15
IPR000504
MobiDBLite
mobidb-lite
443 483 41 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj1g3v5060520.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v5060520.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.