Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v0546890.1

Overview

Field Value
Gene ID Lj2g3v0546890
Transcript ID Lj2g3v0546890.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: T-complex protein 1 subunit gamma-like [Cicer arietinum] gi|502162879|ref|XP_004512647.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11353:SF63
1 515 515 4.50E-254
IPR012719
PANTHER
PTHR11353
1 515 515 4.50E-254 –
Gene3D
G3DSA:1.10.560.10
2 139 138 4.10E-87
IPR027413
TIGRFAM
TIGR02344
4 515 512 8.80E-257
IPR012719
CDD
cd03337
4 511 508 0
IPR012719
SUPERFAMILY
SSF48592
13 142 130 3.01E-82 –
Pfam
PF00118
31 510 480 1.20E-147
IPR002423
PRINTS
PR00304
33 49 17 1.70E-27
IPR017998
ProSitePatterns
PS00750
36 48 13 –
IPR002194
PRINTS
PR00304
55 73 19 1.70E-27
IPR017998
ProSitePatterns
PS00751
57 73 17 –
IPR002194
ProSitePatterns
PS00995
85 93 9 –
IPR002194
PRINTS
PR00304
85 104 20 1.70E-27
IPR017998
SUPERFAMILY
SSF54849
142 214 73 2.14E-24 –
Gene3D
G3DSA:3.30.260.10
143 211 69 1.20E-27
IPR027410
SUPERFAMILY
SSF52029
210 364 155 1.05E-38
IPR027409
Gene3D
G3DSA:3.50.7.10
212 359 148 1.60E-40
IPR027409
SUPERFAMILY
SSF54849
355 390 36 2.14E-24 –
PRINTS
PR00304
359 381 23 1.70E-27
IPR017998
Gene3D
G3DSA:3.30.260.10
360 390 31 1.20E-27
IPR027410
Coils
Coil
370 390 21 – –
Gene3D
G3DSA:1.10.560.10
391 512 122 4.10E-87
IPR027413
SUPERFAMILY
SSF48592
391 511 121 3.01E-82 –
PRINTS
PR00304
393 405 13 1.70E-27
IPR017998
MobiDBLite
mobidb-lite
514 541 28 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0051082
Molecular function Unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj2g3v0546890.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0546890.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.