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Lj2g3v0621590.1

Overview

Field Value
Gene ID Lj2g3v0621590
Transcript ID Lj2g3v0621590.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein argonaute 1-like [Glycine max] gi|356531036|ref|XP_003534084.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50821
1 71 71 25.674
IPR003100
Gene3D
G3DSA:2.170.260.10
1 77 77 4.30E-26 –
CDD
cd02846
1 70 70 6.78E-27 –
PANTHER
PTHR22891
1 577 577 0 –
PANTHER
PTHR22891:SF45
1 577 577 0 –
SUPERFAMILY
SSF101690
2 111 110 2.20E-38
IPR003100
Pfam
PF02170
3 86 84 4.60E-21
IPR003100
Pfam
PF16488
97 143 47 5.40E-17
IPR032472
CDD
cd04657
115 565 451 0 –
Gene3D
G3DSA:3.40.50.2300
130 302 173 3.20E-17 –
Pfam
PF16487
154 229 76 3.90E-08
IPR032473
SUPERFAMILY
SSF53098
231 566 336 5.06E-89
IPR012337
SMART
SM00950
245 566 322 7.00E-127
IPR003165
ProSiteProfiles
PS50822
245 566 322 58.987
IPR003165
Pfam
PF02171
246 565 320 3.60E-112
IPR003165
Gene3D
G3DSA:3.30.420.10
323 562 240 9.90E-20
IPR012337

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj2g3v0621590.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0621590.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.