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Lj2g3v0661400.1

Overview

Field Value
Gene ID Lj2g3v0661400
Transcript ID Lj2g3v0661400.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protection of telomeres protein 1b-like [Cicer arietinum] gi|502138042|ref|XP_004503267.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00976
20 152 133 6.40E-07
IPR011564
Gene3D
G3DSA:2.40.50.140
31 156 126 3.90E-31 –
Pfam
PF02765
31 151 121 2.00E-18
IPR011564
SUPERFAMILY
SSF50249
31 154 124 1.84E-23
IPR012340
CDD
cd04497
32 150 119 7.58E-25 –
PANTHER
PTHR14513
32 470 439 5.70E-103
IPR028389
SUPERFAMILY
SSF50249
173 275 103 6.37E-10
IPR012340

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000723
Biological process Telomere maintenance Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences.
Subterm of
GO:0000784
Cellular component Nuclear chromosome, telomeric region The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0043047
Molecular function Single-stranded telomeric DNA binding Interacting selectively and non-covalently with single-stranded telomere-associated DNA.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj2g3v0661400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0661400.1, powered by CORGI.

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