Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v0777060.1

Overview

Field Value
Gene ID Lj2g3v0777060
Transcript ID Lj2g3v0777060.1
Lotus japonicus genome version MG20 v3.0
Description ethylene-responsive transciptional coactivator-like protein [Retama raetam] gi|19225065|gb|AAL32037.2|AF439278_1
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam
PF08523
11 80 70 1.30E-19
IPR013729
MobiDBLite
mobidb-lite
43 66 24 – –
PANTHER
PTHR10245:SF33
54 143 90 2.00E-35 –
PANTHER
PTHR10245
54 143 90 2.00E-35 –
SUPERFAMILY
SSF47413
85 139 55 3.10E-13
IPR010982
Gene3D
G3DSA:1.10.260.40
86 139 54 8.40E-14
IPR010982
CDD
cd00093
87 139 53 1.65E-11 –
SMART
SM00530
87 142 56 5.60E-14
IPR001387
Coils
Coil
88 108 21 – –
ProSiteProfiles
PS50943
88 142 55 13.862
IPR001387
Pfam
PF01381
88 139 52 2.20E-14
IPR001387

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj2g3v0777060.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0777060.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.