Domain Predictions — View

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cd00093

Source: CDD

Description

HTH_XRE

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 18

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0100629.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: multiprotein-bridging factor 1a-like [Fragaria vesca subsp]. vesca] gi\|470134727\|ref\|XP_004303190.1\|	Domains G3DSA:1.10.260.40 IPR001387 IPR010982 PF01381 PS50943 PTHR10245 PTHR10245:SF33 SM00530 SSF47413 cd00093	10
Lj0g3v0113449.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: multiprotein-bridging factor 1b-like [Cicer arietinum] gi\|502083808\|ref\|XP_004487571.1\|	Domains G3DSA:1.10.260.40 IPR001387 IPR010982 IPR013729 PF01381 PF08523 PS50943 PTHR10245 PTHR10245:SF33 SM00530 SSF47413 cd00093 mobidb-lite	13
Lj1g3v0246870.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ethylene-responsive transciptional coactivator-like protein [Retama raetam] gi\|19225065\|gb\|AAL32037.2\|AF439278_1	Domains Coil G3DSA:1.10.260.40 IPR001387 IPR010982 IPR013729 PF01381 PF08523 PS50943 PTHR10245 PTHR10245:SF33 SM00530 SSF47413 cd00093 mobidb-lite	14
Lj1g3v0775750.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ethylene-responsive transciptional coactivator-like protein [Retama raetam] gi\|19225065\|gb\|AAL32037.2\|AF439278_1	Domains G3DSA:1.10.260.40 IPR001387 IPR010982 PF01381 PTHR10245 PTHR10245:SF33 SSF47413 cd00093	8
Lj1g3v1318050.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ethylene-responsive transciptional coactivator-like protein [Retama raetam] gi\|19225065\|gb\|AAL32037.2\|AF439278_1	Domains G3DSA:1.10.260.40 IPR001387 IPR010982 PF01381 PTHR10245 PTHR10245:SF33 SSF47413 cd00093	8
Lj1g3v4591200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: histidyl-tRNA synthetase-like [Glycine max] gi\|356505252\|ref\|XP_003521406.1\|	Domains Coil G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR004154 IPR004516 IPR006195 IPR015807 MF_00127 PF03129 PF13393 PIRSF001549 PS50862 PTHR11476 PTHR11476:SF5 SSF52954 SSF55681 TIGR00442 cd00093 cd00773 mobidb-lite	20
Lj2g3v0777060.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ethylene-responsive transciptional coactivator-like protein [Retama raetam] gi\|19225065\|gb\|AAL32037.2\|AF439278_1	Domains Coil G3DSA:1.10.260.40 IPR001387 IPR010982 IPR013729 PF01381 PF08523 PS50943 PTHR10245 PTHR10245:SF33 SM00530 SSF47413 cd00093 mobidb-lite	14
Lj4g3v2743020.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ethylene-responsive transciptional coactivator-like protein [Retama raetam] gi\|19225065\|gb\|AAL32037.2\|AF439278_1	Domains Coil G3DSA:1.10.260.40 IPR001387 IPR010982 IPR013729 PF01381 PF08523 PS50943 PTHR10245 PTHR10245:SF33 SM00530 SSF47413 cd00093 mobidb-lite	14
Lj6g3v0025640.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: cyanate hydratase-like [Cicer arietinum] gi\|502123007\|ref\|XP_004497968.1\|	Domains G3DSA:1.10.260.40 G3DSA:3.30.1160.10 IPR003712 IPR008076 IPR010982 MF_00535 PF02560 PIRSF001263 PR01693 PTHR34186 PTHR34186:SF1 SM01116 SSF47413 SSF55234 TIGR00673 cd00093	16
LotjaGi1g1v0688700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp\|O82413\|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|I1JPP8\|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700	Domains Coil G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR001387 IPR004154 IPR004516 IPR006195 IPR015807 IPR036621 IPR041715 MF_00127 PF03129 PF13393 PIRSF001549 PS50862 PTHR43707 PTHR43707:SF1 SSF52954 SSF55681 TIGR00442 cd00093 cd00773 mobidb-lite	23
LotjaGi1g1v0688700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp\|O82413\|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|K7KFU0\|K7KFU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700	Domains Coil G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR001387 IPR004154 IPR004516 IPR006195 IPR036621 IPR041715 PF03129 PF13393 PIRSF001549 PS50862 PTHR43707 PTHR43707:SF1 SSF52954 SSF55681 cd00093 cd00773 mobidb-lite	20
LotjaGi1g1v0688700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp\|O82413\|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|I1JPP8\|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700	Domains Coil G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR001387 IPR004154 IPR004516 IPR006195 IPR036621 IPR041715 PF03129 PF13393 PIRSF001549 PS50862 PTHR43707 PTHR43707:SF1 SSF52954 SSF55681 cd00093 cd00773 mobidb-lite	20
LotjaGi1g1v0688700.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp\|O82413\|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|I1JPP8\|I1JPP8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700	Domains Coil G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR001387 IPR004154 IPR004516 IPR006195 IPR015807 IPR036621 IPR041715 MF_00127 PF03129 PF13393 PIRSF001549 PS50862 PTHR43707 PTHR43707:SF1 SSF52954 SSF55681 TIGR00442 cd00093 cd00773 mobidb-lite	23
LotjaGi1g1v0688700.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histidine--tRNA ligase; TAIR: AT3G46100.1 Histidyl-tRNA synthetase 1; Swiss-Prot: sp\|O82413\|SYHM_ARATH Histidine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|K7KFU0\|K7KFU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688700	Domains Coil G3DSA:3.30.930.10 IPR001387 IPR004516 IPR006195 IPR041715 PF13393 PS50862 PTHR43707 PTHR43707:SF1 SSF55681 cd00093 cd00773 mobidb-lite	14
LotjaGi2g1v0214300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Multiprotein-bridging factor, putative; TAIR: AT3G24500.1 multiprotein bridging factor 1C; Swiss-Prot: sp\|Q9LV58\|MBF1C_ARATH Multiprotein-bridging factor 1c; TrEMBL-Plants: tr\|Q8S4Q2\|Q8S4Q2_9FABA Ethylene-responsive transciptional coactivator-like protein; Found in the gene: LotjaGi2g1v0214300	Domains Coil G3DSA:1.10.260.40 IPR001387 IPR010982 IPR013729 PF01381 PF08523 PS50943 PTHR10245 PTHR10245:SF71 SM00530 SSF47413 cd00093 mobidb-lite	14
LotjaGi3g1v0240200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Multiprotein-bridging factor, putative; TAIR: AT2G42680.1 multiprotein bridging factor 1A; Swiss-Prot: sp\|Q9SJI8\|MBF1A_ARATH Multiprotein-bridging factor 1a; TrEMBL-Plants: tr\|I3T5E9\|I3T5E9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0240200	Domains G3DSA:1.10.260.40 IPR001387 IPR010982 IPR013729 PF01381 PF08523 PS50943 PTHR10245 PTHR10245:SF114 SM00530 SSF47413 cd00093 mobidb-lite	13
LotjaGi3g1v0252000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Multiprotein-bridging factor, putative; TAIR: AT2G42680.1 multiprotein bridging factor 1A; Swiss-Prot: sp\|Q9SJI8\|MBF1A_ARATH Multiprotein-bridging factor 1a; TrEMBL-Plants: tr\|A0A151RR76\|A0A151RR76_CAJCA Multiprotein-bridging factor 1b; Found in the gene: LotjaGi3g1v0252000	Domains G3DSA:1.10.260.40 IPR001387 IPR010982 IPR013729 PF01381 PF08523 PS50943 PTHR10245 PTHR10245:SF114 SM00530 SSF47413 cd00093 mobidb-lite	13
LotjaGi6g1v0004000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cyanate hydratase; TAIR: AT3G23490.1 cyanase; Swiss-Prot: sp\|B7FKW7\|CYNS_MEDTR Cyanate hydratase; TrEMBL-Plants: tr\|I3SSK7\|I3SSK7_MEDTR Cyanate hydratase; Found in the gene: LotjaGi6g1v0004000	Domains G3DSA:1.10.260.40 G3DSA:3.30.1160.10 IPR001387 IPR003712 IPR008076 IPR010982 IPR036581 MF_00535 PF02560 PIRSF001263 PR01693 PTHR34186 SM01116 SSF47413 SSF55234 TIGR00673 cd00093 cd00559	18

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd00559	CDD	1	5.56